BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926705
Length=670
Score E
Sequences producing significant alignments: (Bits) Value
AT1G73330.1 | Symbols: ATDR4, DR4 | drought-repressed 4 | chr1:... 931 0.0
> AT1G73330.1 | Symbols: ATDR4, DR4 | drought-repressed 4 | chr1:27568718-27569717
REVERSE LENGTH=1000
Length=1000
Score = 931 bits (504), Expect = 0.0
Identities = 612/664 (92%), Gaps = 7/664 (1%)
Strand=Plus/Plus
Query 12 GAAACAACCATGAAGGCTACCGTATCCATCACTGTCATCTTTCTCGTGGTCGCTTTGGCC 71
||||||| ||||||||| ||| ||||||||||| |||||||||||||||||||||||||
Sbjct 58 GAAACAATCATGAAGGCCACCATATCCATCACTACCATCTTTCTCGTGGTCGCTTTGGCC 117
Query 72 GCACCCTCTCTAGCTCGTCCAGACAATCATGTCGAGGACTCTGTAGGCCGTTTACTTCGT 131
|||||||| ||||||||||| ||||| |||||||||||||||||||||||| ||||||||
Sbjct 118 GCACCCTCCCTAGCTCGTCCTGACAACCATGTCGAGGACTCTGTAGGCCGTCTACTTCGT 177
Query 132 CCTGGTCAAACCTATCACATCGTACCTGC-AACTCCTGAGAGAGGAGGAGGTCTTTTCTC 190
||||||||||| || |||||||||||||| || ||| |||| |||||||||| |||||||
Sbjct 178 CCTGGTCAAACGTACCACATCGTACCTGCGAA-TCCCGAGACAGGAGGAGGTATTTTCTC 236
Query 191 GAACAGTGAAGAGATCTGTCCTCTCGACATCCTCCAGTCAAACGATCTC-CTTGACTTGG 249
|||||||||||| ||||||||||| |||||| ||||||||||| ||| | ||||||||||
Sbjct 237 GAACAGTGAAGAAATCTGTCCTCTTGACATCTTCCAGTCAAACAATC-CGCTTGACTTGG 295
Query 250 GCGTACCCATCAAATTTAAGTCCGAGTTATGGTTTGTTAAGGAAATGAATAATGTCGCCA 309
|| |||||||||||||||||||||||||||||||||||||||||||||||| | || |||
Sbjct 296 GCCTACCCATCAAATTTAAGTCCGAGTTATGGTTTGTTAAGGAAATGAATAGTATCACCA 355
Query 310 TAGAGTTCGAGGCTCCCAACTGGTTTTTGTGTCCTGAAGAATCCAAGGGGTGGAGAGTCG 369
| ||||| |||||||| |||||||||||||||||| |||||||||||||||||||||| |
Sbjct 356 TCGAGTTTGAGGCTCCGAACTGGTTTTTGTGTCCTAAAGAATCCAAGGGGTGGAGAGTTG 415
Query 370 TGTACTCTGAAGAATACAAAAAGAGTCTTATAATAAGCACTGGTGTTTCATCAAACCCAA 429
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 416 TGTACTCTGAAGAATTCAAAAAGAGTCTTATAATAAGCACTGGTGGTTCATCAAACCCAA 475
Query 430 GTGGCTTCCAGATCCATCGAGTTGACGGAGGTTTTTACAAGATTGTGTATTGTACGACCA 489
|||||||||||||||||||||| ||||||||| |||||||||||| |||||||| | ||
Sbjct 476 GTGGCTTCCAGATCCATCGAGTCGACGGAGGTGCTTACAAGATTGTATATTGTACAAACA 535
Query 490 TATCTCCTACTACGTGCATGGACGTTGGCATATTCACCGATATCTCTGGTGCACGACGCT 549
| || |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 536 TCTCGACTACTACGTGCATGAACGTTGGCATATTCACCGATATCTCTGGTGCACGACGCT 595
Query 550 TAGCCTTGACCAACGACGAGGCTCTCCTAGTTAAGTTCCAGAAGGCAGCAACTCCAAAAC 609
|||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 596 TAGCCTTGACCAGCGATGAGGCTCTCCTAGTTAAGTTCCAGAAGGCAGCAACTCCAAAAG 655
Query 610 CTGATTTGAAGACTAAGCTGAGGATGTTCCCTTTCTACTAACTAACAACT-T-GTACCAA 667
||||||||||||||||||||||||||||||||||||||| | | |||||| | |||||||
Sbjct 656 CTGATTTGAAGACTAAGCTGAGGATGTTCCCTTTCTACTGATTCACAACTCTTGTACCAA 715
Query 668 -AAA 670
|||
Sbjct 716 GAAA 719
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32401024815
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5