BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926706
Length=1509
Score E
Sequences producing significant alignments: (Bits) Value
AT1G73340.1 | Symbols: | Cytochrome P450 superfamily protein |... 1219 0.0
> AT1G73340.1 | Symbols: | Cytochrome P450 superfamily protein
| chr1:27573116-27575419 FORWARD LENGTH=1711
Length=1711
Score = 1219 bits (660), Expect = 0.0
Identities = 738/777 (95%), Gaps = 0/777 (0%)
Strand=Plus/Plus
Query 732 AGGCACGAAAGGAAATCATAAGCAAGATAAACAAGACGGTAGAGAAGTTGTTGCAGAACA 791
||||||||||||| |||||||| ||||||||||||||| |||| ||| |||||| ||||
Sbjct 808 AGGCACGAAAGGAGATCATAAGGAAGATAAACAAGACGATAGAAAAGCGGTTGCAAAACA 867
Query 792 AAGAAGCATCAGATACTGCTGGGAATGGTGTACTTGGAAGATTGCTTGAAGAAGAAAGCT 851
||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 868 AAGCAGCATCAGATACTGCTGGTAATGGTGTACTTGGAAGATTGCTTGAAGAAGAAAGTT 927
Query 852 TACCAAACGAATCCATGGCAGATTTTATCATCAATCTACTGGTTGCCGGAAATGAAACCA 911
||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 928 TACCAAACGAATCAATGGCAGATTTTATCATCAATCTACTGTTTGCCGGAAATGAAACAA 987
Query 912 CCGCGAAAACAATGCTGTTTGCGGTTTACTTCCTCACTCATTGTCCTAAGGCCATGACCC 971
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 988 CCTCAAAAACAATGCTGTTTGCGGTTTACTTCCTCACTCATTGTCCTAAGGCCATGACCC 1047
Query 972 AACTCCTGGCGGAACACGATAGGCTCGCGGGAGGAATGCTAACATGGCAAGATTACAAGA 1031
||||||||| |||||| |||||||||||||| |||||| |||||||||||||||||||||
Sbjct 1048 AACTCCTGGAGGAACATGATAGGCTCGCGGGTGGAATGTTAACATGGCAAGATTACAAGA 1107
Query 1032 CAATGGACTTCACTCAATGCGTAATAGATGAGACACTCAGGCTTGGGGGAATTGCAATCT 1091
||||||||||||||||||||||||||||||| |||||||||||||| |||||||| || |
Sbjct 1108 CAATGGACTTCACTCAATGCGTAATAGATGAAACACTCAGGCTTGGTGGAATTGCGATAT 1167
Query 1092 GGCTAATGAGAGAGGCGAAAGAAGATGTCTCATACCAAGATTATGTCATTCCCAAGGGAT 1151
|||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1168 GGCTTATGAGAGAGGCCAAAGAAGATGTCTCATATCAAGATTATGTCATTCCCAAGGGAT 1227
Query 1152 GCTTTGTTGTTCCGTTTCTCTCGGCAGTGCACTTAGATGAGAGCTATTACAAGGAAAGTC 1211
|||| || ||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 1228 GCTTCGTAGTTCCGTTTCTCTCGGCAGTGCACTTAGACGAGAGCTATTACAAAGAAAGTC 1287
Query 1212 TCTCCTTCAATCCATGGCGATGGCTTGACCCTGAAACTCAGCAAAAGAGGAATTGGAGAA 1271
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1288 TCTCCTTCAATCCATGGCGATGGCTTGACCCTGAAACTCAGCAAAAGAGGAATTGGAGAA 1347
Query 1272 CGAGCCCTTTCTATTGCCCATTTGGTGGAGGAACTCGGTTTTGTCCAGGAGCAGAACTGG 1331
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1348 CGAGCCCTTTTTATTGCCCATTTGGTGGAGGAACTCGGTTTTGCCCAGGAGCAGAACTGG 1407
Query 1332 CTCGCCTACAAATTGCTCTCTTTCTGCATTACTTCATCACCACATACAGGTGGACACAAC 1391
||||||| |||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 1408 CTCGCCTTCAAATTGCTCTCTTTCTGCATTACTTCATCACCACATATAAGTGGACACAAC 1467
Query 1392 TTAAGGAAGATCGTATCTCCTTCTTCCCTTCGGCTCGTCTAGTGAATGGCTTCAAAATCC 1451
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1468 TTAAGGAAGATCGTATCTCCTTCTTCCCTTCGGCTCGTCTAGTGAATGGCTTCAAAATCC 1527
Query 1452 AGTTGAACAGACGAGACAGTGATCCTCGGAATCAATAAAGAACCAACACTCTCCACC 1508
||||||||||||||||||||||||||| |||||||||| ||||||||| ||| ||||
Sbjct 1528 AGTTGAACAGACGAGACAGTGATCCTCCGAATCAATAATGAACCAACAATCTTCACC 1584
Score = 1062 bits (575), Expect = 0.0
Identities = 682/734 (93%), Gaps = 6/734 (1%)
Strand=Plus/Plus
Query 2 GAGACAGAAG-AATTGGTTTTAATGGCGGAATTTGCAGGAGAATCTTATTGGCTTCTCTC 60
||||||| | ||||| |||| |||||||||| |||||||||||| ||| ||||||||||
Sbjct 1 GAGACAG-GGTAATTGATTTT-ATGGCGGAATCTGCAGGAGAATCCTATAGGCTTCTCTC 58
Query 61 GGGTGCTGCTGCATCAACCACATTTCTTGCTTTCATCATCATCTTCTTCCTCGCGGGAAT 120
|| | || ||||||||||||||||||| ||||| ||||||||||| || ||||| ||
Sbjct 59 ---TGTTTCTTCATCAACCACATTTCTTGCCTTCATAATCATCTTCTTACTTGCGGGTAT 115
Query 121 AGCAAGAAGAAAGAGAAGAGAGCCTCATAGGCTGCCTCCGGGAAGCAGAGGATGGCCTTT 180
|||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 116 AGCAAGAAGAAAGAGAAGAGCGCCTCACAGGCTGCCTCCGGGAAGCAGAGGATGGCCTTT 175
Query 181 GATCGGAGACACCTTCGCTTGGCTCAACGCCGTCTCTGGTTCTCATCCTTCAAGTTTCGT 240
||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct 176 GATCGGAGATACCTTCGCTTGGCTCAACGCCGTCGCTGGTTCTCATCCTTCAAGCTTCGT 235
Query 241 TGATAAACAAATCAAAAGGTATGGGAGGATATTCTCGTGTAGCTTGTTCGGGAAATGGGC 300
|| |||||||| |||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 236 CGAGAAACAAATAAAAAAGTATGGGAGGATATTCTCGTGTAGCTTGTTTGGGAAATGGGC 295
Query 301 AGTGGTATCAGCTGACCCGGCTTTTAACCGGTTCATAATGCAGAACGAAGGCAAGCTGTT 360
|||||||||||| ||||||| |||||||||||| ||||||||||||||||| ||||| ||
Sbjct 296 AGTGGTATCAGCAGACCCGGATTTTAACCGGTTTATAATGCAGAACGAAGGAAAGCTATT 355
Query 361 TCAGTCGAGTTACCCAAAGTCTTTCAGGGATTTGGTTGGGAAAGATGGAGTGATCACGGT 420
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 356 TCAGTCAAGTTATCCAAAGTCTTTCAGGGATTTGGTTGGGAAAGATGGAGTGATCACAGT 415
Query 421 GCACGGTGATCAGCAGAGACGGCTTCATTCGATTGCATCAAGCATGATGCGTCATGACCA 480
||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 416 GCATGGTGATCAGCAGAGACGGCTTCACTCGATTGCATCGAGCATGATGCGTCATGACCA 475
Query 481 GCTCAAGACTCATTTTCTTGAGGTTATTCCAGTGGTTATGCTTCAGACATTGAGTAATTT 540
|||||||||||||||||||||||||||||| || |||||||| |||||| ||||||||||
Sbjct 476 GCTCAAGACTCATTTTCTTGAGGTTATTCCCGTCGTTATGCTCCAGACACTGAGTAATTT 535
Query 541 CAAGGACGGTGAAGTCGTGCTTCTCCAGGATATCTGCAGAAAGGTTGCGATTCATCTTAT 600
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 536 CAAGGACGGTGAAGTCGTGCTTCTCCAAGATATCTGCAGAAAGGTTGCCATTCATCTTAT 595
Query 601 GGTTAACCAACTTCTCGGTGTGTCGAGCGAATCAGAAGTTGATGAAATGTCTCAGTTTTT 660
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 596 GGTTAACCAACTTCTCGGTGTGTCGAGCGAATCAGAAGTCGATGAAATGTCTCAGCTTTT 655
Query 661 CTCCGATTTTGTTGATGGATGTCTCTCTGTTCCTATAAACTTGCCTGGTTTCACATACCA 720
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 656 CTCTGATTTTGTTGATGGATGTCTCTCTGTTCCTATTGACTTGCCTGGTTTCACATACAA 715
Query 721 CAAAGCAATGAAGG 734
||||||||||||||
Sbjct 716 CAAAGCAATGAAGG 729
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74447408235
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5