BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926710
Length=1348
Score E
Sequences producing significant alignments: (Bits) Value
AT1G73380.1 | Symbols: | unknown protein; CONTAINS InterPro DO... 2023 0.0
> AT1G73380.1 | Symbols: | unknown protein; CONTAINS InterPro
DOMAIN/s: Protein of unknown function DUF1308 (InterPro:IPR010733);
Has 162 Blast hits to 160 proteins in 67 species: Archae
- 0; Bacteria - 2; Metazoa - 120; Fungi - 0; Plants - 34;
Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). |
chr1:27589032-27590822 FORWARD LENGTH=1538
Length=1538
Score = 2023 bits (1095), Expect = 0.0
Identities = 1275/1361 (94%), Gaps = 16/1361 (1%)
Strand=Plus/Plus
Query 1 AAGCAGACGACGGTGTTGGCCATGGAGATCGGAGAGATAGAGATAGCGAAACAGAGATGC 60
||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 48 AAGCAGACGACGGTGTTGGTCATGGAGATAGGAGAGATAGAGATAGCGAAACAGAGATGC 107
Query 61 GAATCGGTTATAAGAACAATCGAGAATCTTCCTTTATCAACTGCAGTCACTGCTTCGTGC 120
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 108 GAATCGGTTATAAGAACAATCGAGAATCTTCCTTTATCAACTGCAATCACTGCTTCGTGC 167
Query 121 CGTCGCACActccttaagctcgcttcctccgagctctccttcctctcgtcactctcttcc 180
||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 168 CGTCGCACACTCCTTAAGCTCGCTTCCTCCGAGCTCTCCTTTCTCTCGTCTCTCTCTTCT 227
Query 181 gttccttctcc-acagcctctcAGTGTCAACATTGGCCACATTGAGTCAGTTGTACGGAT 239
| ||||||||| | | ||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 228 GATCCTTCTCCGAAA-CCTCTCAGTGTCAACATTGGCCACATTGAATCAGTGGTACGGAT 286
Query 240 TTTGCAGCTCCCTTCCGTCACCGGCGTTTCGCGCGTTTGCAAACCGATTCCTCTTCCGAT 299
||| ||||| || || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 287 TTTACAGCTTCCGTCTATCACCGGCGTTTCGCGCGTTTGCAAACCGATTCCTCTTCCGAT 346
Query 300 TGGTGGCGTTCATGTTGATCTGGTATGTACTCTCGGAAAAGTTCCCGTATGGATCATCGT 359
||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||
Sbjct 347 TGGTGGCGTTCATGTTGATCTCGTTTGTACTCTCGGAAAAGTTCCTGTATGGATCATCGT 406
Query 360 CTCTGATAGAAACCCTAGATACATCTCCTGGAGTGGAGATCGCCATGGAAGCAAAGGTTT 419
|||||||||||||||||| ||||||||||||| || |||||||||||||||||||||||
Sbjct 407 CTCTGATAGAAACCCTAGGTACATCTCCTGGAACGGTGATCGCCATGGAAGCAAAGGTTT 466
Query 420 AAGATCTAGAATCGAACAGATTCTCGCCGCTGCTAATTCCACAACAACGCTAAAACCTTC 479
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 467 AAGATCTAGAATCGAACAGATTCTCGCCGCTGCTAATTCCACAACCACGCTTAAACCTTC 526
Query 480 TTCGGTGATTCTGTTCTTCGCAAATGGTTTACCTTGTTC-GATTTACGAGAAACTGAAAG 538
|||||||||||||||||||||||||||| | |||| ||| | ||||||||||||||||||
Sbjct 527 TTCGGTGATTCTGTTCTTCGCAAATGGTCTCCCTTCTTCAG-TTTACGAGAAACTGAAAG 585
Query 539 ACGAATTTGGAGCTGCGCATTTCGATTT---CTTCGGG-CTGGATTCGGATTCGGATATT 594
| ||||| ||||||| | |||||||||| ||||| ||| ||||||||||||||||
Sbjct 586 ATGAATTCGGAGCTGTGTATTTCGATTTTGGCTTCGATTCTG-ATTCGGATTCGGATATC 644
Query 595 TCAATGCTCGATGATTTCGATTGCGAATGGGTTAACGTTGTTCGAACCAGATCATATAAA 654
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 645 TCAATGCTCGATGATTTTGATTGCGAATGGGTTAACGTTGTTCGAACCAGATCATATAAA 704
Query 655 GAAGCAGTTTCTGTTGAGATCAAGCTCATAGATCAATGTGATTCACTTGCCTCTCCTGAA 714
|||||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 705 GAAGCAGTTTCTATTGAGATCAAGCTGATAGATCAATGTGATTCACTTGCTTCTCCTGAA 764
Query 715 ACTGAGGTTTTAGTTCAAGAAGATGTCACAGAGCTAAGCCAAAAAGATGTTTTTTCTTCT 774
||||||||||||||||||| ||| |||||||||||||| |||||||||| ||||||| ||
Sbjct 765 ACTGAGGTTTTAGTTCAAGCAGAGGTCACAGAGCTAAGTCAAAAAGATGCTTTTTCTACT 824
Query 775 GTAATCTCCTCCATGAGATTGCTTGGTGAAGACTATCTCATTAATTTCGACACAACGGCT 834
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 825 GTAATCTCCTCCATGAGATTGCTTGGTGAAGACTGTCTCATTAATTTCGACACAACGGCT 884
Query 835 CTTGTTGCTCTCGTTTCTGGAATCAGTAACGGGTGTGCAGAGAGACTCGTGGATATGCCT 894
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 885 CTTGTTGCTCTCGTTTCCGGAATCAGTAATGGGTGTGCAGAGAGACTCGTGGATATGCCT 944
Query 895 GAGATCGACTTAGAAGAAAAGTTTAAGGGAAATACTGTTTTTGTGATCGCTCAGGCGAGA 954
|||||||| |||||||||||||||||||| ||||| ||||||||||| ||||||||||||
Sbjct 945 GAGATCGAATTAGAAGAAAAGTTTAAGGGCAATACCGTTTTTGTGATTGCTCAGGCGAGA 1004
Query 955 TCTGAAATTGAGAAGCCAGGTCTTGTCAAAATGGGAAGTGTATTATCAGGGAAGCGAGGG 1014
|||||||||||||||||||| ||||||||| |||||| |||||||||||||||||| ||
Sbjct 1005 TCTGAAATTGAGAAGCCAGGCCTTGTCAAAGTGGGAACTGTATTATCAGGGAAGCGTGGT 1064
Query 1015 ATTGTATGCAAGAGTGTTCTCTCAGAGTTCGAGGAGTTAGTATCCATGTATGCTGGACCC 1074
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 1065 ATTGTATGCAAGAGTGTTTTCTCAGAGTTCAAGGAGTTAGTATCCATGTATGCTGGACCC 1124
Query 1075 AATGAGAAACTCAGAGCTGAGCAGTTGTTGAAGAGCCTAATGGTGGTAAATGACAATCCC 1134
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 1125 AATGAGAAACTCAGAGCTGAACAGTTATTGAAGAGCCTAATGGTGGTAAATGACAATCCC 1184
Query 1135 TCAGAGCGTGTGATGAGCCTCCCAACAACGAGGAAGTTAGCGATGAAGAACAAGACTGTG 1194
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 TCAGAGCGTGTGATGAGTCTCCCAACAACGAGGAAGTTAGCGATGAAGAACAAGACTGTG 1244
Query 1195 TTTGGGACAGGTGATAGATGGGGAGCTCCTACATTGACTGCAAACATGGCGTTTGTCAGA 1254
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1245 TTTGGGACAGGTGATAGATGGGGAGCTCCTACCTTGACTGCAAACATGGCGTTTGTCAGA 1304
Query 1255 GCCGTGGCTCAATCGGGCATGTCTCTGGCCACTATCGATCATAGCCCTCGAGCTCTCACC 1314
||||||||||| |||||||||||||| ||||||| || ||||||||||||||||||||
Sbjct 1305 GCCGTGGCTCAGTCGGGCATGTCTCTTTCCACTATTGACCATAGCCCTCGAGCTCTCACT 1364
Query 1315 GGTGATTAAT-G-G--A--GTTCAA-CTGCTACCTATTCTG 1348
|| ||||| | | | | |||||| || ||||||||||||
Sbjct 1365 GGCGATTAGTCGTGTTAAAGTTCAAACTTCTACCTATTCTG 1405
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66365120490
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5