BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926713
Length=1315
Score E
Sequences producing significant alignments: (Bits) Value
AT1G73390.1 | Symbols: | Endosomal targeting BRO1-like domain-... 2109 0.0
AT1G17940.1 | Symbols: | Endosomal targeting BRO1-like domain-... 1376 0.0
> AT1G73390.1 | Symbols: | Endosomal targeting BRO1-like domain-containing
protein | chr1:27590810-27594198 REVERSE LENGTH=1579
Length=1579
Score = 2109 bits (1142), Expect = 0.0
Identities = 1252/1306 (96%), Gaps = 4/1306 (0%)
Strand=Plus/Plus
Query 4 TTCGTTAAGCTCTAGAAATGGGATGCTTTGCATCAAGGCCGAAGGACACTGGTGGAAACA 63
||||||||||| ||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 34 TTCGTTAAGCTTTAGAAATGGGATGCTTTGCATCAAGGCCGAATGATACTGGTGGAAACA 93
Query 64 GAAGAAAGCCAACGAGCATCGGGGATGTTTCTGTATACGTACCTGGTTTAAGGATACCCC 123
|||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||
Sbjct 94 GAAGAAAGCCAACGAGCATCGGAGATGTTTCAGTATATGTACCTGGTTTAAGGATACCTA 153
Query 124 AGCCTGTGGAGTTTTCTCAGTCACTGGGTGATCAATTGCCAAAGACTCTGGTGGAGCGCT 183
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 154 AGCCCGTGGAGTTTTCTCAGTCACTGGGTGATCAATTGCCAAAGACTCTAGTGGAGCGCT 213
Query 184 TGACAGCTTTAAGAACGCGAATTGTTGTGATGGCAAATCAAGAAGGACCAACGATAACAA 243
||||||||||||||||| |||| ||||||||||||||||||||||||||||| |||||||
Sbjct 214 TGACAGCTTTAAGAACGAGAATAGTTGTGATGGCAAATCAAGAAGGACCAACTATAACAA 273
Query 244 GAACTAGGAGGAAGACACAGCATGGAGGTTCTACACTCGCAGATCTCCATCAAGCTTTGG 303
|||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 274 GAACCAGGAGGAAGACACAGCATGGAGGTTCTACGCTCGCAGATCTCCATCACGCTTTGG 333
Query 304 AAGATTATCTACCTGTTCTCTTAGGATTAACTAAAGATGGTAGCCATTTACAATGCAAAG 363
|||||||| |||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 334 AAGATTATATACCGGTTCTCTTAGGATTAACTAAAGATGGTAGCCATTTACAATTCAAAG 393
Query 364 TACAGTTTAATTGGGTAAATCAGGAAGATG-AGCAAGAGGAAACAGCCATATCAAACGTT 422
|||||||||||||||||||||||||||||| || |||||||||||||||| ||||| |||
Sbjct 394 TACAGTTTAATTGGGTAAATCAGGAAGATGAAG-AAGAGGAAACAGCCATGTCAAATGTT 452
Query 423 TGGTATGAAATACTGTCGGTTTTGCATCTAATGGCAATGCTACAAATGTCACAAGCCAAT 482
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 453 TGGTATGAAATATTGTCGGTTTTGCATCTAATGGCAATGTTACAAATGTCACAAGCCAAT 512
Query 483 TTACTACTTCTTCCTAGAGGTTCCAGTGATGGCTATCATCCAAAGATATCAGAAGAAAAT 542
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 513 TTACTGCTTCTTCCTAGAGGTTCCAGTGATGGCTATCATCCAAAAATATCAGAAGAAAAT 572
Query 543 AGGCGAGCTTCAATCGATATCTTCTTAAAGGCAGCTGGATACCTTGACTGTGCTGTGAAG 602
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 573 AGGCGAGCTTCAATCGATATCTTCTTAAAAGCAGCTGGATACCTGGACTGTGCTGTGAAG 632
Query 603 CATGTTCTTCCTCAGTTTTCAACCGAGCTGAGGAGAAGTTTACCAGTTGACCTAGCAGAA 662
|||||||||||||| ||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 633 CATGTTCTTCCTCATTTTTCAACCGAGCAGAGGAGAAGTTTACCAATTGACCTAGCAGAA 692
Query 663 GGCGCTTTACGAGCACTTTGTTTGCAAGCATTAGGCCAGGGTGTTGATATCCAACTTGGG 722
|| |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 693 GGAGCTTTACGTGCACTTTGCTTGCAAGCATTAGGCCAGGGTGTTGATATCCAACTTGGG 752
Query 723 ATGGCGATTGATAGTGCAAAAGCCACTCTTGCTGTGAAACGAAGACTTTCGTGTGAAATG 782
|||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||
Sbjct 753 ATGGCGATTGATAGTGCAAAAGCCACTCTTGCCGTGAAGCGAAGACTTTCATGTGAAATG 812
Query 783 GTGAAATACTGGCAGCAGGCACAAGATAACTTAATGAATCTTCCATTAGCAAACGGGTGG 842
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 813 GTGAAATACTGGCAGCAGGCACAAGATAACTTAATGAATCTTCCATTAGCAAACGGGTGG 872
Query 843 GGCGAAAAGCATA-GTCTCTTTGTTAAGTGGAAGTATGTTGAAGCTAAGGCTGCAGCTTA 901
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 873 GGCGAAAAGCATATG-CTCTTTGTTAAGTGGAAGTATGTTGAAGCTAAGGCTGCAGCTTA 931
Query 902 CTACTACCACGGTTTGATTCTTGATGAAGGAAACACCGAGAAATCACATGGCATGGCGGT 961
||||||||||||| ||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 932 CTACTACCACGGTCTGATTCTTGATGAAGGAAATACAGAGAAATCACATGGCATGGCGGT 991
Query 962 TGCTGCTTTACAGGCTGCAGATGAGTGTTTCAAAGAAAGTAAGAAAGCAAGTGAGGCGTT 1021
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 992 TGCTGCTTTACAGGCTGCAGATGAGTGTTTGAAAGAAAGTAAGAAAGCAAGTGAGGCGTT 1051
Query 1022 TAACACCTCTTCACCCACATCAAGGACTCCTCCACTTTTCGGGACAATGAAATATCTATC 1081
|||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 1052 TAACACCTCTTCACCCACGTCAAGGACTCCTTCACTTTTCGGGACAATGAAATATCTATC 1111
Query 1082 AGAGAAAATACCGAAAGAAACTTCAAGTAAAGTCAGGATAAACCTTGATCTATACTCTTA 1141
|||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1112 AGAGAAAATACCAAAAGAAACTTCAAGTAAAGTCAGGATAAACCGTGATCTATACTCTTA 1171
Query 1142 TGAAAAGATCATGGAGACAGCACCGACGCTTCCTGATTTTGCCTTGGCATTGAAACCCGA 1201
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1172 TGAAAAGATCATGGAGACAGCACCAACGCTTCCTGATTTTGCCTTGGCATTGAAACCCGA 1231
Query 1202 TGAGTACCAACTTCCTTCTGTCGATGCGTCATGGTCTGAAGCCAGTCTACAGACTaaaaa 1261
||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 1232 TGAGTACCAACTTCCTTCTGTTGATGCGTCATGGTCTGAAGCCAGTCTACGGACTAAAAA 1291
Query 1262 aaCATCAAATCACATAAAGGGCAACCAACGATAGAGCAGTGAATAG 1307
||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 1292 CACATCAAATCACATATAGGGCAACCAAAGATAGAGCAGTGAATAG 1337
> AT1G17940.1 | Symbols: | Endosomal targeting BRO1-like domain-containing
protein | chr1:6169341-6173222 REVERSE LENGTH=1734
Length=1734
Score = 1376 bits (745), Expect = 0.0
Identities = 1074/1234 (87%), Gaps = 17/1234 (1%)
Strand=Plus/Plus
Query 19 AAATGGGATGCTTTGCATCAAGGCCGAAGGACACTGGTGGAAACAGAAGAAAGCCAACGA 78
|||||||||||||||| |||| |||||| ||| | ||||| ||||||||||||||||| |
Sbjct 235 AAATGGGATGCTTTGCGTCAACGCCGAAAGACTCAGGTGGGAACAGAAGAAAGCCAACAA 294
Query 79 GCATCGGGGATGTTTCTGTATACGTACCTGGTTTAAGGATACCCCAG-CCTGTGGAGTTT 137
||||||| || ||||| ||||| |||||||||||||||||| ||||| | ||||| |||
Sbjct 295 GCATCGGTGAGGTTTCAGTATATGTACCTGGTTTAAGGATA-CCCAGAGCGGTGGA-TTT 352
Query 138 TCT-CAGTCACTGGGTGATCAATTGCCAAAGACTCTGGTGGAGCGCTTGACAGCTTTAAG 196
| | |||||||| ||||||||||| || |||||| | ||||| |||||||||||||||||
Sbjct 353 TTTGCAGTCACTTGGTGATCAATTACCGAAGACTTTAGTGGAACGCTTGACAGCTTTAAG 412
Query 197 AACGCGAATTGTTGTGATGGCAAATCAAGAAGGACCAACGATAACAAGAACTAGGAGGAA 256
|||||| || || |||||||| |||||||||||||| || || || ||||||||||| ||
Sbjct 413 AACGCGTATAGTAGTGATGGCTAATCAAGAAGGACCTACAATTACGAGAACTAGGAGAAA 472
Query 257 GACACAGCATGGAGGTTCTACACTCGCAGATCTCCATCAAGCTTTGGAAGATTATCTACC 316
|||||| ||||||||||| || ||| |||||||||||||||||| ||||||||||||
Sbjct 473 GACACAACATGGAGGTTCAACGCTCTTGGATCTCCATCAAGCTTTGCTAGATTATCTACC 532
Query 317 TGTTCTCTTAGGATTAACTAAAGATGGTAGCCATTTACAATGCAAAGTACAGTTTAATTG 376
|||| |||| |||||||||||||||||||||||| |||| | ||||| || ||||||||
Sbjct 533 TGTTGTCTTGGGATTAACTAAAGATGGTAGCCATCTACAGTTTAAAGTGCAATTTAATTG 592
Query 377 GGTAAATCAGGAAGATGAGCAAGAGGAAACAGCCATATCAAACGTTTGGTATGAAATACT 436
|||||||||||| |||||| |||||||||||| || |||||||||||||||||| | |
Sbjct 593 GGTAAATCAGGAGGATGAGGAAGAGGAAACAGAGATGTCAAACGTTTGGTATGAAGTTTT 652
Query 437 GTCGGTTTTGCATCTAATGGCAATGCTACAAATGTCACAAGCCAATTTACTACTTCTTCC 496
|| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 653 ATCTGTTTTGCATCTAATGGCAATGCTACAAATGTCTCAAGCCAATTTACTGCTTCTTCC 712
Query 497 TAGAGGTTCCAGTGATGG-CT-A-TCATCC-AAAGATATCAGAAGAAAATAGGCGAGCTT 552
||||||||| |||||||| | | |||||| |||| |||| |||||||| || ||| |||
Sbjct 713 TAGAGGTTCTAGTGATGGTCACAATCATCCGAAAG-TATCCGAAGAAAACAGACGAACTT 771
Query 553 CAATCGATATCTTCTTAAAGGCAGCTGGATACCTTGACTGTGCTGTGAAGCATGTTCTTC 612
| || |||||||||||||| ||||||||||| ||||| ||||| || ||||||||||| |
Sbjct 772 CGATTGATATCTTCTTAAAAGCAGCTGGATATCTTGATTGTGCCGTTAAGCATGTTCTCC 831
Query 613 CTCAGTTTTCAACCGAGCTGAGGAGAAGTTTACCAGTTGACCTAGCAGAAGGCGCTTTAC 672
| |||||||| | |||| ||||||||||||||||||||| |||||||||| || |||
Sbjct 832 CCCAGTTTTCTGCTGAGCAAAGGAGAAGTTTACCAGTTGACTTAGCAGAAGGAACTCTAC 891
Query 673 GAGCACTTTGTTTGCAAGCA-TTAGGCCAGGGTGTTGATATCCAACTTGGGATGGCGATT 731
| || ||||| ||||||||| || |||||||||||||||||||||||||| |||||||||
Sbjct 892 GGGCTCTTTGCTTGCAAGCACTT-GGCCAGGGTGTTGATATCCAACTTGGCATGGCGATT 950
Query 732 GATAG-TGCAAAAGCCACTCTTGCTGTGAAACGAAGACTTTCGTGTGAAATGGTGAAATA 790
||||| | |||| ||||||||||| || |||||||||||||| |||||||||||||||||
Sbjct 951 GATAGCT-CAAAGGCCACTCTTGCAGTAAAACGAAGACTTTCATGTGAAATGGTGAAATA 1009
Query 791 CTGGCAGCAGGCACAAGATAACTTAATGAATCTTCCATTAGCAAACGGGTGGGGCGAAAA 850
|||||||||||||||||||| ||||||||||| || |||||||| || ||||| |||||
Sbjct 1010 TTGGCAGCAGGCACAAGATAATTTAATGAATCTCCCGTTAGCAAATGGTTGGGGAGAAAA 1069
Query 851 GCATAGTCTCTTTGTTAAGTGGAAGTATGTTGAAGCTAAGGCTGCAGCTTACTACTACCA 910
|||| | |||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 1070 GCATGGACTCTTTGTTAAGTGGAAGTATGTTGAAGCTAAGGCTGCGGCTTACTACTATCA 1129
Query 911 CGGTTTGATTCTTGATGAAGGAAACACCGAGAAATCACATGGCATGGCGGTTGCTGCTTT 970
|||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||
Sbjct 1130 TGGTTTGATTCTTGATGAAGGAAACACAGAGAAGTCACATGGCATGGCAGTTGCTGCTTT 1189
Query 971 ACAGGCTGCAGATGAGTGTTTCAAAGAAAGTAAGAAAGCAAGTGAGGCGTTTAACACCTC 1030
||| ||||||||||| |||||||||||||||||||||||| || || || ||| ||||
Sbjct 1190 ACAAGCTGCAGATGAATGTTTCAAAGAAAGTAAGAAAGCATCCGAAGCATTCAACGCCTC 1249
Query 1031 TTCACCCACATCAAGGACTCCTCCACT-TTTCGGGACAATGAAATATCTATCAGAGAAAA 1089
| | || || ||||| || || || || ||| || ||||||||||||||| | |||||||
Sbjct 1250 TGCGCCTACTTCAAGAACACCGCCCCTCTTT-GGAACAATGAAATATCTAACTGAGAAAA 1308
Query 1090 TACCGAAAGAAACTTCAAGTAAAGTCAGGATAAACCTTGATCTATACTCTTATGAAAAGA 1149
| |||||||| ||||| ||||||||||||||||||| |||||| ||||| |||||||| |
Sbjct 1309 TCCCGAAAGATACTTCGAGTAAAGTCAGGATAAACCGTGATCTCTACTCCTATGAAAAAA 1368
Query 1150 TCATGGAGACAGCACCGACGCTTCCTGATTTTGCCTTGGCATTGAAACCCGATGAGTACC 1209
|||||||||||||||| || ||||||||||| || |||||||||||||| |||||||| |
Sbjct 1369 TCATGGAGACAGCACCAACACTTCCTGATTTCGCTTTGGCATTGAAACCAGATGAGTATC 1428
Query 1210 AACTTCCT-TCTGTCGATGCGTCATGGTCTGAAG 1242
||||||| || | ||| || || | ||||||||
Sbjct 1429 AACTTCCACTC-GCCGAAGCTTCGTAGTCTGAAG 1461
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64708502505
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5