BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926721
Length=980
Score E
Sequences producing significant alignments: (Bits) Value
AT1G73500.1 | Symbols: ATMKK9, MKK9 | MAP kinase kinase 9 | chr... 1548 0.0
AT1G18350.1 | Symbols: ATMKK7, BUD1, MKK7 | MAP kinase kinase 7... 617 5e-176
> AT1G73500.1 | Symbols: ATMKK9, MKK9 | MAP kinase kinase 9 | chr1:27639091-27640529
REVERSE LENGTH=1439
Length=1439
Score = 1548 bits (838), Expect = 0.0
Identities = 935/980 (95%), Gaps = 13/980 (1%)
Strand=Plus/Plus
Query 5 TCTTCTTCTCTCT-TTCCATGGCTTTAGTTCGTGAACGTCGTCAGCTAAATCTCCGTCTT 63
||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 161 TCTTCTTCTCTCTATTCCATGGCTTTAGTACGTGAACGTCGTCAGCTAAATCTCCGTCTT 220
Query 64 CATCTTCCTCCGATTTCCGACCGCCGCTTCT-C-CGTC-TCCTCCTCCGTCACCACCACC 120
| ||||||||| || |||||||||||||||| | | || |||||||| | ||||||||||
Sbjct 221 CCTCTTCCTCCAATCTCCGACCGCCGCTTCTCCACCTCTTCCTCCTCAGCCACCACCACC 280
Query 121 ACCGTCGCTGCTACCTCCGCCTGTAACGGAATCTCCGCCGGTGATCTCGATAAACTCAAC 180
|||||||||| | |||||||||||||||||| |||||||||| |||||||||
Sbjct 281 ACCGTCGCTG--------G-CTGTAACGGAATCTCCGCTTGTGATCTCGAGAAACTCAAC 331
Query 181 GTTCTCGGATGCGGTAACGGCGGGATTGTTTATAAAGTCAGTCATAAAACCACATCGGAG 240
|||||||||||||| ||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 332 GTTCTCGGATGCGGAAACGGCGGGATTGTTTACAAAGTCCGTCATAAAACCACATCGGAG 391
Query 241 ATCTACGCTTTGAAAACAGTTAACGGCGACATGGATCCGATTTTCACAAGGCAATTGATG 300
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 392 ATCTACGCTTTGAAAACAGTTAACGGCGACATGGATCCGATTTTCACAAGACAGTTGATG 451
Query 301 CGAGAGATGGAGATTCTCCGCCGTATAGATTCGCCGTACGTCGTTAAGTGTCACGGAATC 360
||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 452 CGAGAGATGGAGATTCTCCGCCGTACAGATTCACCGTACGTCGTTAAGTGTCACGGAATC 511
Query 361 TTCGAGAAACCTGTCGTCGGTGAAGTATCGATTCTAATGGAGTATATGGACGGCGGAACC 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 512 TTCGAGAAACCTGTCGTCGGTGAAGTATCGATTCTAATGGAGTATATGGACGGCGGAACC 571
Query 421 CTAGAATCACTACGCGGCGGCGTAACGGAGCAAAAACTCGCCGGATTCGCTAAGCAGATC 480
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 572 CTAGAATCACTACGCGGCGGTGTAACGGAGCAAAAACTCGCCGGATTCGCTAAACAGATC 631
Query 481 TTAAAAGGATTAAGCTATTTACACGCTCTTAAGATCGTTCATCGTGATATCAAACCGGCG 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 632 TTAAAAGGATTAAGCTATTTACACGCTCTTAAGATCGTTCATCGTGATATCAAACCGGCG 691
Query 541 AATCTGCTTCTCAATTCGAAAAACGAAGTTAAAATCGCTGATTTTGGAGTTAGTAAGATC 600
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 692 AATCTTCTTCTCAATTCGAAAAACGAAGTTAAAATCGCTGATTTCGGAGTTAGTAAGATC 751
Query 601 TTAGTCCGATCATTAGATTCGTGTAATTCGTATGTTGGTACTTGTGCTTATATGAGTCCG 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 752 TTAGTCCGATCATTAGATTCGTGTAATTCGTATGTTGGTACTTGTGCTTATATGAGTCCG 811
Query 661 GAGAGGTTTGATTCCGAATCTTCCGGTGGAAGTTCTGATATCTACGCCGGAGATATCTGG 720
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 812 GAGAGGTTTGATTCGGAATCTTCCGGTGGAAGCTCTGATATCTACGCCGGAGATATCTGG 871
Query 721 AGTTTCGGATTGATGATGCTTGAGCTTCTCGTTGGTCATTTTCCGTTACTTCCGCCGGGA 780
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 872 AGTTTCGGATTGATGATGCTTGAGCTTCTCGTTGGTCATTTTCCTTTGCTTCCGCCGGGA 931
Query 781 CAGAGACCTGACTGGGCTACGTTAATGTGCGCGGTGTGTTTCGGAGAACCGCCGCGAGCG 840
||||||||||| ||||| ||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 932 CAGAGACCTGATTGGGCGACGTTGATGTGCGCGGTGTGTTTTGGAGAACCGCCGCGAGCG 991
Query 841 CCGGAGGGATGTTCTGAAGAGTTTAGGAGCTTCGTTGAGTGTTGTCTACGTAAAGATTCG 900
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 992 CCGGAGGGATGTTCTGAAGAGTTTAGGAGCTTCGTTGAGTGTTGTCTCCGTAAAGATTCG 1051
Query 901 AGTAAGCGATGGACGGCGTCGCAGCTTCTTGCTCATCCTTTTCTCCGGGAAGATCTCTGA 960
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 1052 AGTAAGCGATGGACGGCGCCGCAGCTTCTTGCTCATCCTTTTCTCCGGGAAGATCTTTGA 1111
Query 961 TTCGATTCCTTTTGTAACAG 980
||||||||||||||||||||
Sbjct 1112 TTCGATTCCTTTTGTAACAG 1131
> AT1G18350.1 | Symbols: ATMKK7, BUD1, MKK7 | MAP kinase kinase
7 | chr1:6315651-6316738 FORWARD LENGTH=1088
Length=1088
Score = 617 bits (334), Expect = 5e-176
Identities = 664/821 (81%), Gaps = 31/821 (4%)
Strand=Plus/Plus
Query 145 AACGGAATCTCCGCCGGTGATCTCGATAAACTCAACGTTCTCGGATGCGGTAA-CGGCGG 203
||||||||||| || ||| |||| |||||| ||||||||||| | || || | ||||
Sbjct 147 AACGGAATCTCAGCTTCCGATGTCGAGAAACTCCACGTTCTCGGAAGAGG-AAGCAGCGG 205
Query 204 GATTGTTTATAAAGT-CAGTCATAAAACCACATCGGAGATCTACGCTTTGAAAACAGTTA 262
||| || || ||||| || || |||||||| |||||| |||||| ||||| |||| |
Sbjct 206 GATCGTATACAAAGTCCA-CCACAAAACCACGGGGGAGATATACGCTCTGAAATCAGTCA 264
Query 263 ACGGCGACATGGA-TCC-GATTTTCACAAGGCAATTGA-TGCGAGAGATGGAGATTCTCC 319
|||||||||| || ||| | ||||||||| ||||| | ||| ||||||||||| ||||
Sbjct 265 ACGGCGACAT-GAGTCCTG-CTTTCACAAGACAATT-AGCGCGCGAGATGGAGATCCTCC 321
Query 320 GCCGTATAGATTCGCCGTACGTCGTTAAGTGTCACGGAATCTTCGAGAAACCTGTCGTCG 379
| || | ||||| || || ||||| | |||||| || |||||||||||||| ||||||
Sbjct 322 GTCGCACGGATTCTCCTTATGTCGTCAGGTGTCAAGGGATCTTCGAGAAACCAATCGTCG 381
Query 380 GTGAAGTATCGATTCTAATGGAGTATATGGACGGCGGAACCCTAGAATCACTACGCGGCG 439
| || || ||||| || ||||||||||||||||| |||| ||||||||| || |||||||
Sbjct 382 GAGAGGTTTCGATCCTCATGGAGTATATGGACGGTGGAAACCTAGAATCTCTCCGCGGCG 441
Query 440 GCGTAACGGAGCAAA-AACTCGCCGGATTCGCTAAG-CAGATCTTAAAAGGATTAAGCTA 497
||| |||||| ||| |||| || ||||| | | ||||| || ||||| ||||| ||
Sbjct 442 CCGTTACGGAG-AAACAACTAGCGGGATTTTC-CCGCCAGATTTTGAAAGGTTTAAGTTA 499
Query 498 TTTACACGCTCTTAAGATCGTTCATC-GTGATATCAAACCGGCGAATCTGCTTC-TCAAT 555
| | ||| | || ||||||||||| | | || |||||||| |||||||| | || | ||
Sbjct 500 TCTCCACTCACTCAAGATCGTTCA-CAGAGACATCAAACCTGCGAATCTAC-TCTTAAAC 557
Query 556 TCGAAAAACGAAGTTAAAATCGCTGATTTTGGAGTTAGTAAGATC-TTAGTCCGATCATT 614
|||| |||||||||||||||||||||||||||||| || || ||| ||| |||||| ||
Sbjct 558 TCGAGAAACGAAGTTAAAATCGCTGATTTTGGAGTGAGCAAAATCATTAC-CCGATCGTT 616
Query 615 AGATT-CGTGTAATTCGTATGTTGGTACTTGTGCTTATATGAGTCCGGAGAGGTTTGATT 673
||||| | || ||||| || || || ||||| ||||| ||||| |||||||| ||||| |
Sbjct 617 AGATTAC-TGCAATTCCTACGTCGGCACTTGCGCTTACATGAGCCCGGAGAGATTTGACT 675
Query 674 CCGAATCTTCCGGTGGAAGTTCTGATATCTACGCCGGAGATATCTGGAGTTTCGGATTGA 733
| | | |||| | || || ||| | ||||| || |||||||||||||||||| |||
Sbjct 676 CTGC--CG-CCGGAGAAAACTCCGATGTTTACGCAGGCGATATCTGGAGTTTCGGAGTGA 732
Query 734 TGATGCTTGAGCTTCT-CGTTGGTCATTTTCCGTTACTTCCGCCGGGACAGAGACCTGAC 792
|||| |||||||| || ||| || ||||||||||| ||||| | ||||||||||||||||
Sbjct 733 TGATACTTGAGCT-CTTCGTCGGACATTTTCCGTTGCTTCCTCAGGGACAGAGACCTGAC 791
Query 793 TGGGCTACGTTAATGTGCG-CGGTGTG-TTTCGGAGAACCGCCGCGAGCGCCGGAGGGAT 850
||||| ||||||||||||| || |||| ||| |||||||| ||||| |||||||| ||||
Sbjct 792 TGGGCGACGTTAATGTGCGTCG-TGTGCTTT-GGAGAACCACCGCGTGCGCCGGAAGGAT 849
Query 851 GTTCTGAAGAGTTTAGGAGCTTCGTTGAGTGTTGTCTACGTAAAGATTCGAGTAAGCGAT 910
|||| || ||||||||||| || ||||| |||||||| |||||||| |||||| || | |
Sbjct 850 GTTCCGACGAGTTTAGGAGTTTTGTTGACTGTTGTCTCCGTAAAGAATCGAGTGAGAGGT 909
Query 911 GGACGGCGTCGCAGCTTCTTGCTCATCCTTTTCTCCGGGAA 951
||||||||||||||||||| | ||| ||||||||||| |||
Sbjct 910 GGACGGCGTCGCAGCTTCTCGGTCACCCTTTTCTCCGTGAA 950
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47973610385
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5