BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926722
Length=619
Score E
Sequences producing significant alignments: (Bits) Value
AT1G73510.1 | Symbols: | unknown protein; Has 7 Blast hits to ... 542 2e-153
> AT1G73510.1 | Symbols: | unknown protein; Has 7 Blast hits to
7 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr1:27642386-27643189 REVERSE LENGTH=804
Length=804
Score = 542 bits (293), Expect = 2e-153
Identities = 529/636 (83%), Gaps = 43/636 (7%)
Strand=Plus/Plus
Query 2 AATT-GATACGAAACGAAACATGGCGATAGAGAAACAAGATATTAACGAGTC-CCAGATC 59
|||| ||||| ||||||||||||||||||||||||||||| ||||||||||| | ||||
Sbjct 52 AATTCGATACAAAACGAAACATGGCGATAGAGAAACAAGAGATTAACGAGTCGTC-GATC 110
Query 60 GGACTCAACTTGTTCTCC---AAGCGACGTCACAATAAGACGGACTACGACAAACTCTGC 116
||| ||||||| ||||| || || ||||| || ||||| || | ||||||| || |
Sbjct 111 GGATTCAACTTAATCTCCGAGAAACGTCGTCATAACAAGACCCACGATGACAAACCCTAC 170
Query 117 TTCCTCAATTCTCCGACATTCAATTCCTTGGG-ATCACTATCATCTACTGATGGAATCAT 175
|| || |||||| |||||| || ||| |||| ||||| | |||||||||||| ||||||
Sbjct 171 TTGGTCGATTCTCTGACATTAAACTCC-TGGGCATCACAACCATCTACTGATGAAATCAT 229
Query 176 CATCATCGATGACGAT-----G-AGGAGGTAACCCTAGAGCCGAAGAGGAAGAAGCCGAG 229
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 230 CATCATCGATGACGATGAGGAGAAGGAGGTAACCCTAGAGCCGAAGAGGAAGAAGCCGAG 289
Query 230 ATTAGGGTCTTGGTGGGACAACGTCGAACCCTTCGACGAATTAAGTTGCGTGGTCAAGGG 289
|||||||||||||||||||||||||||| || | ||||||||| ||||||||||||||||
Sbjct 290 ATTAGGGTCTTGGTGGGACAACGTCGAAGCCGTGGACGAATTATGTTGCGTGGTCAAGGG 349
Query 290 GTCACCG--GA-GGCAAAGGAAGACAACGATGTTGCATCAAGAGCAGATTCATGTTTTTC 346
|||||| || ||||||||| ||||| | ||||||||||| ||| ||||||| ||||||
Sbjct 350 ATCACCGCCGAAGGCAAAGGAGGACAATGGTGTTGCATCAAAAGCGGATTCATATTTTTC 409
Query 347 TTCTACTGATCCTCACGAGACGAAGAAGAAC--GACGATGA--GAGG-TCTCT-ATCGAA 400
||||||||||| ||||||||||| | ||||| || ||| | |||| | ||| |
Sbjct 410 TTCTACTGATCTTCACGAGACGATGGAGAACAAGAAGATTAACGAGGATAAGAGATC-AC 468
Query 401 TA----AGAAGGAGAACGACGAGAGT---GTCGGTGAGAGTAGGACTAGGAATAGGGGTT 453
|| ||||||| || ||||||||| || |||||||||| |||| ||||| ||||
Sbjct 469 TACCGGAGAAGGATAAAGACGAGAGTACTGTTGGTGAGAGTAATACTAAGAATAAGGGT- 527
Query 454 ATGAACACGTGACCCTTGAGGATTTAGGGGTTTCGGTGGAAGATCTCAAGAGTGTCCCAT 513
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 528 ATGAACACGTGACGCTTGAGGATTTAGGGGTTTCGGTGGAAGATCTCAAGAGTGTCCCAT 587
Query 514 GGGAAGCGTT--AC----ATCCTACATGGGAGATTAGGTCGGATCCATGGCT-TAATGGC 566
|||||||||| | || | ||||||||||||||||||||||||||| | | |||
Sbjct 588 GGGAAGCGTTTGAATTTGATTCGACATGGGAGATTAGGTCGGATCCATGG-TATGGTGGA 646
Query 567 TATATTGAGGACCTTGGTCTCTCTTT-AGTTTAATT 601
|| || || ||| ||| ||||||||| | |||||||
Sbjct 647 TACATGGAAGAC-TTG-TCTCTCTTTGATTTTAATT 680
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29839083318
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5