BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926732
Length=312
Score E
Sequences producing significant alignments: (Bits) Value
AT1G73603.1 | Symbols: LCR64 | low-molecular-weight cysteine-ri... 416 6e-116
AT1G73607.1 | Symbols: LCR65 | low-molecular-weight cysteine-ri... 346 7e-95
AT1G49715.1 | Symbols: | Defensin-like (DEFL) family protein |... 303 5e-82
AT4G10655.1 | Symbols: | Encodes a defensin-like (DEFL) family... 191 4e-48
> AT1G73603.1 | Symbols: LCR64 | low-molecular-weight cysteine-rich
64 | chr1:27674288-27674953 FORWARD LENGTH=387
Length=387
Score = 416 bits (225), Expect = 6e-116
Identities = 286/314 (91%), Gaps = 10/314 (3%)
Strand=Plus/Plus
Query 1 AAAGAAAACAAGAAACAAAAATGGCCAAGGCAACTTCTTCACTTGTCGTCCCCATCATCT 60
|||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 53 AAAGAAAAAAAGAAAAAAAAATGGCCAAGGCAACTTCTTCACTTGTCGTCCCCATCATCT 112
Query 61 TTCTTGTGATATTTGCGTTAGTTGAGCAGAATATGGGATGTAATGATTATGATGTTGGTG 120
|||||||||||||||| ||||||||||||||||||||||||||||||||| | ||| ||
Sbjct 113 TTCTTGTGATATTTGCTTTAGTTGAGCAGAATATGGGATGTAATGATTAT-A--TTGTTG 169
Query 121 GCAATGGGTGCGACCATTGTCG-GCTAAGATGCCTCAAATATTATCCACCTACAAGAAAG 179
|| ||| ||||| |||||||| | ||||||||||| |||||||||| |||||||||
Sbjct 170 GCGATGTGTGCGTTCATTGTCGAG-AAAGATGCCTCAGATATTATCCAGTTACAAGAAAA 228
Query 180 GCCGAATG-T-CAGCTTAATCATTGTATTTGCATCGGCCCTTGTCCGGATGATAGGCCTC 237
||||| || | ||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 229 GCCGAGTGTTACAG--GAATCATTGTCTTTGCATCGGCCCTTGTCCGGATGATAGGCCTC 286
Query 238 ATAAGCGATTCCAAATGTTAAACTCTTC-AAAAATGTATAAGCAAAAATCCTAAGTTGAA 296
|||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||||
Sbjct 287 ATAAGCGATTCCAAATGTTAAACTCTTCCAAAAATGTAAAAGCACAAATCCTAAGTTGAA 346
Query 297 TGTCAAAATCATAA 310
||||||||||||||
Sbjct 347 TGTCAAAATCATAA 360
> AT1G73607.1 | Symbols: LCR65 | low-molecular-weight cysteine-rich
65 | chr1:27676227-27676835 FORWARD LENGTH=381
Length=381
Score = 346 bits (187), Expect = 7e-95
Identities = 274/313 (88%), Gaps = 17/313 (5%)
Strand=Plus/Plus
Query 1 AAAGAAAACAAGAAACAAAAATGGCCAAGGCAACTTCTTCACTTGTCGTCCCCATCATCT 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 15 AAAGAAAAAAAGAAACAAAAATGGCCAAGGCAACTTCTTCACTTGTCGTCCCCATCATCT 74
Query 61 TTCTTGTGATATTTGCGTTAGTTGAGCAGAATATGGGATGTAATGATTATGATGTTGGTG 120
|||||||||||||||| |||||||||||||||| ||||||| ||||||||||||| |
Sbjct 75 TTCTTGTGATATTTGCTTTAGTTGAGCAGAATACGGGATGTTTTGATTATGATGTT--TA 132
Query 121 GCAATGGGTGCGACCATTGTCG-GCTAAGATGCCTCAAATATTATCCACCTACAAGAAAG 179
||| | ||||| |||||||| | |||||||||||||||||||||| ||||||||||
Sbjct 133 CCAACCG-TGCGATCATTGTCGAGA-AAGATGCCTCAAATATTATCCAGTTACAAGAAAG 190
Query 180 GCCGAAT-GTCAGCTTAATCATTGTATTTGCATCGGCCCTTGTCCGGATGATAGGCCTCA 238
||| | | ||| | ||||||||| ||||||| ||||||||||||||||||| |
Sbjct 191 GCC-ATTTGTCGGAAAAATCATTGTGTTTGCATTGGCCCTTGTCCGGATGATA------A 243
Query 239 TAAGCGATTCCAAATGTTAAACTCTTCAAAAATGTATAAGCAA-AAATCCTAAGTTGAAT 297
| ||||||||| ||||||||||||||||||||||| ||| || ||||||||||||||||
Sbjct 244 -A-GCGATTCCAGATGTTAAACTCTTCAAAAATGTAAAAG-AACAAATCCTAAGTTGAAT 300
Query 298 GTCAAAATCATAA 310
|||||||||||||
Sbjct 301 GTCAAAATCATAA 313
> AT1G49715.1 | Symbols: | Defensin-like (DEFL) family protein
| chr1:18396772-18397339 REVERSE LENGTH=345
Length=345
Score = 303 bits (164), Expect = 5e-82
Identities = 254/294 (86%), Gaps = 19/294 (6%)
Strand=Plus/Plus
Query 21 ATGGCCAAGGCAACTTCTTCACTTGTCGTCCCCATCATCTTTCTTGTGATATTTGCGTTA 80
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1 ATGGCCAAGGCAACTTCTTCACTTGTCGTCCCCATCATCTTTCTTGTGATATTTGCTTTA 60
Query 81 GTTGAGCAGAATATGGGATGTAAT-GATTATGATGTTGGTGGCAATGGGTGCGACCATTG 139
||||||||||||| ||||||| | |||||||||||| | ||| | ||||| |||||
Sbjct 61 GTTGAGCAGAATACGGGATGTT-TCGATTATGATGTT--TACCAACCG-TGCGATCATTG 116
Query 140 TCG-GCTAAGATGCCTCAAATATTATCCACCTACAAGAAAGGCCGAAT-GTCAGCTTAAT 197
||| | |||||||||||||||||||||| ||||||||| ||| | | ||| | |||
Sbjct 117 TCGAGA-AAGATGCCTCAAATATTATCCAGTTACAAGAAAAGCC-ATTTGTCGGAAAAAT 174
Query 198 CATTGTATTTGCATCGGCCCTTGTCCGGATGATAGGCCTCATAAGCGATTCCAAATGTTA 257
|||||| ||||||| |||||||||||| |||||| | | ||||||||||||||||
Sbjct 175 CATTGTGTTTGCATTGGCCCTTGTCCGAATGATA------A-A-GCGATTCCAAATGTTA 226
Query 258 AACTCTTCAAAAATGTATAAGCAA-AAATCCTAAGTTGAATGTCAAAATCATAA 310
||||||||||||||||| ||| || |||||||||||||||||||||||||||||
Sbjct 227 AACTCTTCAAAAATGTAAAAG-AACAAATCCTAAGTTGAATGTCAAAATCATAA 279
> AT4G10655.1 | Symbols: | Encodes a defensin-like (DEFL) family
protein. | chr4:6578839-6579024 FORWARD LENGTH=186
Length=186
Score = 191 bits (103), Expect = 4e-48
Identities = 158/184 (86%), Gaps = 6/184 (3%)
Strand=Plus/Plus
Query 115 TTGGTGGCAATGGGTGCGACCATTGTCGGCTAAGATGCCTCAAATATTATCCACCTACAA 174
||| |||| ||| ||||| ||||||| | || |||||||| |||||||||| |||||
Sbjct 6 TTGTTGGCGATGTGTGCGTTCATTGTC-GAGAAAATGCCTCAGATATTATCCAGTTACAA 64
Query 175 GAAAGGCCGAAT-GTCAGCTTAATCATTGTATTTGCATCGGCCCTTGTCCGGATGATAGG 233
||||||| | | ||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 65 GAAAGGCTG-TTAGTCAGAAGAATCATTGTCTTTGCATCGGCCCTTGTCCGGATGATAGG 123
Query 234 CCTCATAAGCGATTCCAAATGTTAAACTCTTCAAAAA-TGTATAAGCAA-AAATCCTAAG 291
|||||||| |||||| ||||||||||||||||||||| |||| ||| || ||||||||||
Sbjct 124 CCTCATAAACGATTCGAAATGTTAAACTCTTCAAAAAATGTAAAAG-AACAAATCCTAAG 182
Query 292 TTGA 295
||||
Sbjct 183 TTGA 186
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 14477111712
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5