BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg926732 Length=312 Score E Sequences producing significant alignments: (Bits) Value AT1G73603.1 | Symbols: LCR64 | low-molecular-weight cysteine-ri... 416 6e-116 AT1G73607.1 | Symbols: LCR65 | low-molecular-weight cysteine-ri... 346 7e-95 AT1G49715.1 | Symbols: | Defensin-like (DEFL) family protein |... 303 5e-82 AT4G10655.1 | Symbols: | Encodes a defensin-like (DEFL) family... 191 4e-48 > AT1G73603.1 | Symbols: LCR64 | low-molecular-weight cysteine-rich 64 | chr1:27674288-27674953 FORWARD LENGTH=387 Length=387 Score = 416 bits (225), Expect = 6e-116 Identities = 286/314 (91%), Gaps = 10/314 (3%) Strand=Plus/Plus Query 1 AAAGAAAACAAGAAACAAAAATGGCCAAGGCAACTTCTTCACTTGTCGTCCCCATCATCT 60 |||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 53 AAAGAAAAAAAGAAAAAAAAATGGCCAAGGCAACTTCTTCACTTGTCGTCCCCATCATCT 112 Query 61 TTCTTGTGATATTTGCGTTAGTTGAGCAGAATATGGGATGTAATGATTATGATGTTGGTG 120 |||||||||||||||| ||||||||||||||||||||||||||||||||| | ||| || Sbjct 113 TTCTTGTGATATTTGCTTTAGTTGAGCAGAATATGGGATGTAATGATTAT-A--TTGTTG 169 Query 121 GCAATGGGTGCGACCATTGTCG-GCTAAGATGCCTCAAATATTATCCACCTACAAGAAAG 179 || ||| ||||| |||||||| | ||||||||||| |||||||||| ||||||||| Sbjct 170 GCGATGTGTGCGTTCATTGTCGAG-AAAGATGCCTCAGATATTATCCAGTTACAAGAAAA 228 Query 180 GCCGAATG-T-CAGCTTAATCATTGTATTTGCATCGGCCCTTGTCCGGATGATAGGCCTC 237 ||||| || | ||| ||||||||| ||||||||||||||||||||||||||||||||| Sbjct 229 GCCGAGTGTTACAG--GAATCATTGTCTTTGCATCGGCCCTTGTCCGGATGATAGGCCTC 286 Query 238 ATAAGCGATTCCAAATGTTAAACTCTTC-AAAAATGTATAAGCAAAAATCCTAAGTTGAA 296 |||||||||||||||||||||||||||| ||||||||| ||||| ||||||||||||||| Sbjct 287 ATAAGCGATTCCAAATGTTAAACTCTTCCAAAAATGTAAAAGCACAAATCCTAAGTTGAA 346 Query 297 TGTCAAAATCATAA 310 |||||||||||||| Sbjct 347 TGTCAAAATCATAA 360 > AT1G73607.1 | Symbols: LCR65 | low-molecular-weight cysteine-rich 65 | chr1:27676227-27676835 FORWARD LENGTH=381 Length=381 Score = 346 bits (187), Expect = 7e-95 Identities = 274/313 (88%), Gaps = 17/313 (5%) Strand=Plus/Plus Query 1 AAAGAAAACAAGAAACAAAAATGGCCAAGGCAACTTCTTCACTTGTCGTCCCCATCATCT 60 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 15 AAAGAAAAAAAGAAACAAAAATGGCCAAGGCAACTTCTTCACTTGTCGTCCCCATCATCT 74 Query 61 TTCTTGTGATATTTGCGTTAGTTGAGCAGAATATGGGATGTAATGATTATGATGTTGGTG 120 |||||||||||||||| |||||||||||||||| ||||||| ||||||||||||| | Sbjct 75 TTCTTGTGATATTTGCTTTAGTTGAGCAGAATACGGGATGTTTTGATTATGATGTT--TA 132 Query 121 GCAATGGGTGCGACCATTGTCG-GCTAAGATGCCTCAAATATTATCCACCTACAAGAAAG 179 ||| | ||||| |||||||| | |||||||||||||||||||||| |||||||||| Sbjct 133 CCAACCG-TGCGATCATTGTCGAGA-AAGATGCCTCAAATATTATCCAGTTACAAGAAAG 190 Query 180 GCCGAAT-GTCAGCTTAATCATTGTATTTGCATCGGCCCTTGTCCGGATGATAGGCCTCA 238 ||| | | ||| | ||||||||| ||||||| ||||||||||||||||||| | Sbjct 191 GCC-ATTTGTCGGAAAAATCATTGTGTTTGCATTGGCCCTTGTCCGGATGATA------A 243 Query 239 TAAGCGATTCCAAATGTTAAACTCTTCAAAAATGTATAAGCAA-AAATCCTAAGTTGAAT 297 | ||||||||| ||||||||||||||||||||||| ||| || |||||||||||||||| Sbjct 244 -A-GCGATTCCAGATGTTAAACTCTTCAAAAATGTAAAAG-AACAAATCCTAAGTTGAAT 300 Query 298 GTCAAAATCATAA 310 ||||||||||||| Sbjct 301 GTCAAAATCATAA 313 > AT1G49715.1 | Symbols: | Defensin-like (DEFL) family protein | chr1:18396772-18397339 REVERSE LENGTH=345 Length=345 Score = 303 bits (164), Expect = 5e-82 Identities = 254/294 (86%), Gaps = 19/294 (6%) Strand=Plus/Plus Query 21 ATGGCCAAGGCAACTTCTTCACTTGTCGTCCCCATCATCTTTCTTGTGATATTTGCGTTA 80 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1 ATGGCCAAGGCAACTTCTTCACTTGTCGTCCCCATCATCTTTCTTGTGATATTTGCTTTA 60 Query 81 GTTGAGCAGAATATGGGATGTAAT-GATTATGATGTTGGTGGCAATGGGTGCGACCATTG 139 ||||||||||||| ||||||| | |||||||||||| | ||| | ||||| ||||| Sbjct 61 GTTGAGCAGAATACGGGATGTT-TCGATTATGATGTT--TACCAACCG-TGCGATCATTG 116 Query 140 TCG-GCTAAGATGCCTCAAATATTATCCACCTACAAGAAAGGCCGAAT-GTCAGCTTAAT 197 ||| | |||||||||||||||||||||| ||||||||| ||| | | ||| | ||| Sbjct 117 TCGAGA-AAGATGCCTCAAATATTATCCAGTTACAAGAAAAGCC-ATTTGTCGGAAAAAT 174 Query 198 CATTGTATTTGCATCGGCCCTTGTCCGGATGATAGGCCTCATAAGCGATTCCAAATGTTA 257 |||||| ||||||| |||||||||||| |||||| | | |||||||||||||||| Sbjct 175 CATTGTGTTTGCATTGGCCCTTGTCCGAATGATA------A-A-GCGATTCCAAATGTTA 226 Query 258 AACTCTTCAAAAATGTATAAGCAA-AAATCCTAAGTTGAATGTCAAAATCATAA 310 ||||||||||||||||| ||| || ||||||||||||||||||||||||||||| Sbjct 227 AACTCTTCAAAAATGTAAAAG-AACAAATCCTAAGTTGAATGTCAAAATCATAA 279 > AT4G10655.1 | Symbols: | Encodes a defensin-like (DEFL) family protein. | chr4:6578839-6579024 FORWARD LENGTH=186 Length=186 Score = 191 bits (103), Expect = 4e-48 Identities = 158/184 (86%), Gaps = 6/184 (3%) Strand=Plus/Plus Query 115 TTGGTGGCAATGGGTGCGACCATTGTCGGCTAAGATGCCTCAAATATTATCCACCTACAA 174 ||| |||| ||| ||||| ||||||| | || |||||||| |||||||||| ||||| Sbjct 6 TTGTTGGCGATGTGTGCGTTCATTGTC-GAGAAAATGCCTCAGATATTATCCAGTTACAA 64 Query 175 GAAAGGCCGAAT-GTCAGCTTAATCATTGTATTTGCATCGGCCCTTGTCCGGATGATAGG 233 ||||||| | | ||||| ||||||||| ||||||||||||||||||||||||||||| Sbjct 65 GAAAGGCTG-TTAGTCAGAAGAATCATTGTCTTTGCATCGGCCCTTGTCCGGATGATAGG 123 Query 234 CCTCATAAGCGATTCCAAATGTTAAACTCTTCAAAAA-TGTATAAGCAA-AAATCCTAAG 291 |||||||| |||||| ||||||||||||||||||||| |||| ||| || |||||||||| Sbjct 124 CCTCATAAACGATTCGAAATGTTAAACTCTTCAAAAAATGTAAAAG-AACAAATCCTAAG 182 Query 292 TTGA 295 |||| Sbjct 183 TTGA 186 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 14477111712 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5