BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926743
Length=2010
Score E
Sequences producing significant alignments: (Bits) Value
AT1G73680.2 | Symbols: ALPHA DOX2 | alpha dioxygenase | chr1:27... 2543 0.0
> AT1G73680.2 | Symbols: ALPHA DOX2 | alpha dioxygenase | chr1:27704194-27707518
REVERSE LENGTH=2051
Length=2051
Score = 2543 bits (1377), Expect = 0.0
Identities = 1478/1528 (97%), Gaps = 2/1528 (0%)
Strand=Plus/Plus
Query 468 TGTAGTGGCGACAAAGTTGTTAGCTAGAAAAAGATTCATAGACAATGGGGACCAATTCAA 527
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 503 TGTAGTGGCGACAAAGTTGTTAGCGAGAAAAAGATTCATAGACAATGGGGACCAATTCAA 562
Query 528 CGTGATAGCTTGTTCTTGGATCCAGTTCATGATCCATGATTGGGTTGATCACTTAGAAGA 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 563 CGTGATAGCTTGTTCTTGGATCCAGTTCATGATCCATGATTGGGTTGATCACTTAGAAGA 622
Query 588 CACCCACCAGATTGAGCTTGAAGCTCCAGAAGAAGTAGCAAATGGATGTCCATTGAAGTC 647
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 623 CACCCACCAGATTGAGCTTGAAGCTCCAGAAGAAGTAGCAAGTGGATGTCCATTGAAGTC 682
Query 648 ATTCAAGTTCCTCAGAACGAAGAAAGTTCCCACCGGTGATCACCACAAATCTGGCGCTGT 707
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 683 ATTCAAGTTCCTCAGAACGAAGAAAGTTCCCACCGATGATCACCACAAATCTGGCGCTGT 742
Query 708 CAACACTAGAACCCCTTGGTGGGATGGGAGTGTAATATATGGAAATGACGAGGCCGGAAT 767
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 743 CAACACTAGAACCCCTTGGTGGGATGGGAGTGTAATATATGGAAATGACGAGACTGGAAT 802
Query 768 GAGAAGAGTTAGGGTTTTCAAGGACGGAAAGCTAAAAATCTCTGGGGATGGCTTGTTGGA 827
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 803 GAGAAGAGTTAGGGTTTTCAAGGACGGAAAGCTAAAAATCTCTGGGGATGGCTTGTTGGA 862
Query 828 GAGGGACGAAAGAGGTGTTACTATCTCCGGTGACATAAGAAACAGCTGGTCAGGTTTCTC 887
||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 863 GAGGGACGAAAGAGGTGTTCCGATCTCCGGTGACATAAGAAACAGCTGGTCAGGTTTCTC 922
Query 888 TCTGTTGCAAGCTCTCTTTGTGAAAGAACATAACTCTGTCTGTGATATGCTCAAAGAACG 947
||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||
Sbjct 923 TCTGTTGCAAGCTCTCTTTGTCAAAGAACACAACTCCGTCTGTGATATGCTCAAAGAACG 982
Query 948 GTATCCAGATTTTGATGATGAGAAACTCTACCGGACTGCTAGACTGGTGACTGCAGCGGT 1007
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 983 GTATCCAGATTTTGATGATGAGAAACTCTACCGGACTGCTAGACTTGTGACAGCAGCGGT 1042
Query 1008 TATCGCTAAGGTTCATACAATCGATTGGACAATAGAACTCTTGAAA-ACAGACACACTCA 1066
|||||||||||||||||| ||||||||||||||||||||||| ||| |||||||||||||
Sbjct 1043 TATCGCTAAGGTTCATACGATCGATTGGACAATAGAACTCTT-AAAGACAGACACACTCA 1101
Query 1067 CTGCTGGAATGAGGATCAACTGGTATGGGTTTTTAGGGAAGAAAGTGAAGGACATGGTCG 1126
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 1102 CTGCTGGAATGAGGATCAACTGGTATGGGTTTTTTGGGAAGAAAGTGAAGGACATGGTTG 1161
Query 1127 GAGCAAGATTTGGTCCTATATTTAGCGGCTTAGTTGGTCTGAAGAAACCGAAAGATCATG 1186
||||||||||||||||| |||||||||| ||||||||||||||||||||||| |||||||
Sbjct 1162 GAGCAAGATTTGGTCCTCTATTTAGCGGATTAGTTGGTCTGAAGAAACCGAATGATCATG 1221
Query 1187 GAGTTCCTTATTCCCTTACCGAAGAGTTCGTTAGTGTTTACAGGATGCATTGTCTTCTAC 1246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1222 GAGTTCCTTATTCCCTTACCGAAGAGTTCGTTAGTGTTTACAGGATGCATTGTCTTCTAC 1281
Query 1247 CAGAGACACTTATCCTCCGAGATATGAAATCTGAGAATGTTGACAAAGCAAACCCTGCAA 1306
||||||||||||| |||||||||||||| ||||||||||| ||||||| |||||||||||
Sbjct 1282 CAGAGACACTTATACTCCGAGATATGAACTCTGAGAATGTAGACAAAGAAAACCCTGCAA 1341
Query 1307 TAGAACGAGAGATACCGATGACAGAACTGATCGGGAAAGAAGCAGGACTAAAGGGTTCGA 1366
|||||||||||||||||||||| ||||||||||||||| |||||||| ||||| |||||
Sbjct 1342 TAGAACGAGAGATACCGATGACGGAACTGATCGGGAAAAAAGCAGGAGAAAAGGCTTCGA 1401
Query 1367 AAATTGGGTTTGAGCAGTTACTTGTTTCAATGGGACACCAATCTTGTGGGGCATTGACAT 1426
|| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1402 AACTTGGGTTTGAGCAGTTACTTGTTTCAATGGGACACCAATCTTGTGGCGCATTGACAT 1461
Query 1427 TGTGGAATTACCCTAATTGGATGAGGAACCTTGTGGCTCAAGATATCGACGGAGAAGATA 1486
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1462 TGTGGAACTACCCTAATTGGATGAGGAACCTTGTGGCTCAAGATATCGACGGAGAAGATA 1521
Query 1487 GACCTCACCTTATAGATATGGCTGCCTTGGAGATTTATAGAGATCGGGAGAGAGGAGTTC 1546
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1522 GACCTCACCTTATAGACATGGCTGCCTTGGAGATTTATAGAGACCGGGAGAGAGGAGTTC 1581
Query 1547 CTCGGTACAACGAATTCAGAAAGAATCTGTTGATGAGTCCGATCAGCAAATGGGAAGAGT 1606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1582 CTCGGTACAACGAATTCAGAAAGAATCTGTTGATGAGTCCGATCAGCAAATGGGAAGAGT 1641
Query 1607 TGACAGATGATGAAGAAGCTATCAAGGTTTTAAGAGAAGTGTACGAAGACGATATAGAGA 1666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1642 TGACAGATGATGAAGAAGCTATCAAGGTTTTAAGAGAAGTGTACGAAGACGATATAGAGA 1701
Query 1667 AGCTTGATCTAAACGTGGGATTGCACGCAGAGAAGAAGATCAAAGGATTCGCCATTAGCG 1726
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 1702 AGCTTGATCTAAACGTGGGGTTGCACGCAGAGAAAAAGATCAAAGGATTCGCCATTAGCG 1761
Query 1727 AAACTGCTTTCTTCATCTTTCTCCTCGTCGCCTCCAGGAGGCTAGAAGCAGATAGGTTTT 1786
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 1762 AAACTGCTTTCTTCATCTTCCTCCTTGTCGCCTCCAGGAGGCTAGAAGCAGATAGGTTTT 1821
Query 1787 TCACGACGAACTTCAACGAGAAGACGTATACTAAAGAAGGATTAGAGTGGGTCAATACTA 1846
|||| ||||||||||| |||||||| |||||||| ||||| |||||||||||||||||||
Sbjct 1822 TCACTACGAACTTCAATGAGAAGACTTATACTAAGGAAGGGTTAGAGTGGGTCAATACTA 1881
Query 1847 CAGAGACTTTAAAAGATGTAATAGACAGACACTTCCCAAGCTTAACCGATCAATGGATGC 1906
||||||||||||||||||| |||||| |||||||||| || |||||||||||||||||||
Sbjct 1882 CAGAGACTTTAAAAGATGTGATAGACCGACACTTCCCGAGGTTAACCGATCAATGGATGC 1941
Query 1907 GATGTTCTAGCGCCTTCTCTGTCTGGGGCTCGGATCCTAACCCAAACACTTGGGTTCCTT 1966
||||||| |||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 1942 GATGTTCGAGCGCCTTCTCTGTCTGGGGCTCGGATCCTAACCCAAAGAATTGGGTTCCTT 2001
Query 1967 TGTACCTCCGATCCGCTCCATAGGCCAT 1994
||||||||||||||||||||||||||||
Sbjct 2002 TGTACCTCCGATCCGCTCCATAGGCCAT 2029
Score = 750 bits (406), Expect = 0.0
Identities = 437/452 (97%), Gaps = 1/452 (0%)
Strand=Plus/Plus
Query 1 CATTACAATTGTGTGACTATCATTTAAAGAATAAAGCAAACACATGATCCAAAGAAGATA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 10 CATTACAATTGTGTGACTATCATTTAAAGAATAAAGCAAACACATGATCCAAAGAAGATA 69
Query 61 GATAGGGAGACaaaaaaaaaaTCAAGGCAAAAAATGGGTTTCTCTCCATCTTCTTCATGG 120
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 70 GATAGGGAGACAAAAAAAAA-TCAAGGCAAAAAATGGGTTTCTCTCCATCCTCTTCATGG 128
Query 121 TTTCTTCATCCTCAGCTTCATCATGTTGTTTCCGAGATGTCTTACTTTGATGCTTTTTTA 180
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 129 TTTCTTCATCCTCAGCTTCATCATGTTGTTTCCAAGATGTCTTACTTTGATGCTTTTTTG 188
Query 181 TTCTATATTGTGCACTTAGTGGACAAGCTAGGATTGTGGCATAGGCTTCCAGTGTTATTA 240
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 189 TTCTATATTGTGCACTTAGTGGACAAGCTAGGATTGTGGCATAGATTTCCAGTGTTATTA 248
Query 241 GGAGTGGCTTACTTGGGGTTACGAAGACATCTACATCAACGTTACAATCTTGTACATGTC 300
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 249 GGAGTGGCTTACTTGGGGTTACGAAGACATCTACATCAACGTTACAATCTGGTACATGTC 308
Query 301 GGTCCGATCAACGGTCAGGATTACGACAACGATGAGTTCTGTTATCGTACGGCTGACGGC 360
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 309 GGTCCGATCAACGGTCAGGGTTACGACACCGATGAGTTCTGTTATCGTACGGCTGACGGC 368
Query 361 AAGTGTAATCATCCCTCCGACGACTCCATCGGCAGTCAAGGCAGCTTCATCGGCCGGAAT 420
|||||||| ||||||||||| || |||||||||| ||||||||||||||||||||||||
Sbjct 369 AAGTGTAACCATCCCTCCGATAACACCATCGGCAGCCAAGGCAGCTTCATCGGCCGGAAT 428
Query 421 ATGCCTCCCTCTACTTCTCAGTACGGCATTTT 452
||||||||||||||||||||||||||| ||||
Sbjct 429 ATGCCTCCCTCTACTTCTCAGTACGGCTTTTT 460
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 99597881280
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5