BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926748
Length=1735
Score E
Sequences producing significant alignments: (Bits) Value
AT1G73730.1 | Symbols: EIL3, SLIM1, ATSLIM, AtEIL3 | ETHYLENE-I... 2641 0.0
AT3G20770.1 | Symbols: EIN3, AtEIN3 | Ethylene insensitive 3 fa... 195 2e-48
> AT1G73730.1 | Symbols: EIL3, SLIM1, ATSLIM, AtEIL3 | ETHYLENE-INSENSITIVE3-like
3 | chr1:27730031-27732514 REVERSE LENGTH=2167
Length=2167
Score = 2641 bits (1430), Expect = 0.0
Identities = 1645/1748 (94%), Gaps = 17/1748 (1%)
Strand=Plus/Plus
Query 1 TTTTGATTGATTTTGATTAAATGGGCGATCTTGCTGGGTCCGTGGCAGACATCAGGATGG 60
||||||||||||||| ||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 132 TTTTGATTGATTTTGTTTAAATGGGCGATCTTGCTATGTCCGTAGCAGACATCAGGATGG 191
Query 61 AGAATGAGCCTGATGACTTGGCTAGTGATAATGTTGCTGAGATTGATGTGAGTGATGAAG 120
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 192 AGAATGAGCCTGATGATTTAGCTAGTGATAATGTTGCTGAGATTGATGTGAGTGATGAAG 251
Query 121 AGATTGATGCTGAAGACCTTGAGAGACGGATGTGGAAAGATCGTGTCAGGCTTAAAAGAA 180
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 252 AGATTGATGCTGACGACCTTGAGAGACGGATGTGGAAAGATCGTGTCAGGCTTAAAAGAA 311
Query 181 TCAAAGAGCGACAGAAAGTTGGCTCTCAGGGAGCTCAAACGAAGGAGACACCGAAGAAAA 240
||||||||||||| |||| ||||||||| ||||||||||||||||||||||| |||||||
Sbjct 312 TCAAAGAGCGACAAAAAGCTGGCTCTCAAGGAGCTCAAACGAAGGAGACACCTAAGAAAA 371
Query 241 TCTCGGATCAAGCTCAGAGGAAGAAAATGTCTAGAGCTCAAGATGGTATACTTAAGTACA 300
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 372 TCTCTGATCAAGCTCAGAGGAAGAAAATGTCTAGAGCTCAAGATGGTATCCTTAAGTACA 431
Query 301 TGTTGAAGCTTATGGAAGTCTGCAAAGTTCGCGGGTTTGTTTATGGTATAATACCGGAAA 360
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 432 TGTTGAAGCTTATGGAAGTCTGCAAAGTTCGCGGGTTTGTCTATGGTATAATACCGGAAA 491
Query 361 AGGGAAAGCCCGTGAGCGGTTCCTCTGACAATATAAGAGCTTGGTGGAAAGAGAAAGTGA 420
|||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 492 AGGGCAAGCCTGTGAGTGGTTCCTCTGACAATATAAGAGCTTGGTGGAAAGAGAAAGTGA 551
Query 421 AGTTTGATAAGAACGGGCCAGCCGCAATTGCTAAATACGAAGAGGAGTGTTTAGCTTTTG 480
|||||||||||||||| || || || ||||||||||||||||||||||||||||| ||||
Sbjct 552 AGTTTGATAAGAACGGTCCTGCTGCTATTGCTAAATACGAAGAGGAGTGTTTAGCGTTTG 611
Query 481 GTAAATCCGATGGGAATAGGAATTCGCAGTTTGTTCTCCAGGACCTGCAAGATGCAACTT 540
| ||||| ||||||||||||||||| ||||||||||||||||| |||||||||| ||||
Sbjct 612 GGAAATCTGATGGGAATAGGAATTCACAGTTTGTTCTCCAGGATTTGCAAGATGCTACTT 671
Query 541 TAGGGTCTCTGTTATCTTCTTTGATGCAACATTGTGATCCTCCTCAAAGGAAGTATCCGC 600
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 672 TAGGGTCTTTGTTATCTTCTTTGATGCAACATTGTGATCCTCCTCAAAGGAAGTATCCGT 731
Query 601 TGGAAAAAGGGACTCCTCCGCCTTGGTGGCCAACCGGGAATGAAGAATGGTGGGTGAAAC 660
|||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 732 TGGAGAAAGGGACGCCTCCGCCTTGGTGGCCAACGGGGAATGAAGAATGGTGGGTGAAAC 791
Query 661 TCGGTCTGCCCAAAAGCCAGAGTCCTCCTTACAGAAAACCGCACGATCTCAAGAAGATGT 720
|||||||||| ||||||||||||||||||||| ||||||| || ||||||||||||||||
Sbjct 792 TCGGTCTGCCTAAAAGCCAGAGTCCTCCTTACCGAAAACCTCATGATCTCAAGAAGATGT 851
Query 721 GGAAGGTTGGAGTTTTAACGGCAGTGATCAATCATATGTTGCCTGATATTGCAAAGATTA 780
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 852 GGAAGGTTGGAGTTTTAACGGCAGTGATCAATCATATGTTACCTGATATTGCAAAGATTA 911
Query 781 AGAGGCATGTTCGCCAGTCGAAATGTTTACAGGACAAGATGACAGCTAAAGAGAGTGCGA 840
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 912 AGAGGCATGTTCGTCAGTCGAAATGTTTACAGGACAAGATGACAGCTAAAGAGAGTGCGA 971
Query 841 TTTGGTTGGCGGTTTTGAACCAAGAGGAATCCCTGATTCAGCAGCCTAGCAGTGACAATG 900
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 972 TTTGGTTGGCGGTTTTGAACCAAGAGGAATCTTTGATTCAGCAGCCTAGCAGTGACAATG 1031
Query 901 GAAACTCCAATGTAACCGAGGCACATCGGAGGGGTAATAACGCTGACAGGAGGAAACCTG 960
||||||||||||| || ||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 1032 GAAACTCCAATGTGACTGAGACACATCGTAGGGGTAATAACGCTGACAGGAGGAAACCTG 1091
Query 961 TGATCAACAGTGACAGTGACTATGATGTTGATGGGACAGAGGATGCTTCAGGTTCAGTTT 1020
|| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1092 TGGTCAACAGTGACAGTGACTATGATGTTGATGGGACAGAGGAAGCTTCAGGTTCAGTTT 1151
Query 1021 CATCTAAAGACAGTAGAAGAAATCAGACTCAAAAAGAACAACCAACAGCCATTTCACATA 1080
||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 1152 CATCTAAAGACAGTAGAAGAAATCAGATTCAAAAAGAACAACCAACAGCCATCTCACAT- 1210
Query 1081 T-AGTAAGAGATCAAGATAAAACAGAGAAACATCGCAGAAGGAAAAGACCCCGAATCAGA 1139
| ||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |||
Sbjct 1211 TCAGTAAGAGATCAAGATAAAGCAGAGAAACATCGCAGAAGGAAAAGACCTCGAATTAGA 1270
Query 1140 TCCGGAACAAACAATCGACAAGAGGAAGAACAACCTGAAGCTGAACAAAGAAACATCTTA 1199
|||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1271 TCCGGAACTGTCAATCGACAAGAGGAAGAACAACCTGAAGCTCAACAAAGAAACATCTTA 1330
Query 1200 CCTGATATGAATCATGTGGATGACCCTCTGCTAGAATATAACATCAACGGTACTCATCAC 1259
||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 1331 CCTGATATGAATCATGTTGATGCCCCTCTGCTAGAATATAACATCAACGGTACTCATCAA 1390
Query 1260 GAGGAAGATGTTGTAGACCCAAACATTGCCTTAGGACCAGAGGAGAATGGTCTGGAATTA 1319
||||| |||||||| |||||||| |||||||||||||||||||| |||||||||||| ||
Sbjct 1391 GAGGACGATGTTGTCGACCCAAATATTGCCTTAGGACCAGAGGATAATGGTCTGGAACTA 1450
Query 1320 GTGGTTCCTGAGTTCCATAACAACTATACTTATCTTCCACCTGTTAATAGA-CAAGA-TA 1377
||||||||||||||| |||||||||||||||||||||||| ||||||| || ||| | ||
Sbjct 1451 GTGGTTCCTGAGTTCAATAACAACTATACTTATCTTCCACTTGTTAAT-GAACAA-ACTA 1508
Query 1378 TGATGCCTGTAGACGAAAGGCCAATGCTTTATGGACCAAATCCTAACCATGAGCTGCAAT 1437
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||
Sbjct 1509 TGATGCCTGTAGACGAAAGGCCAATGCTTTATGGACCAAACCCTAACCAAGAGCTTCAAT 1568
Query 1438 TTGGGTCAGGTTACAACTTCTACAATCCCTCTGCAGTGTTTGTGCATAATCAGGAAGACG 1497
|||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 1569 TTGGGTCAGGGTACAACTTCTACAATCCCTCTGCAGTGTTTGTACATAACCAGGAAGACG 1628
Query 1498 ACATTCTCCATACACAGATAGAAATGAATGCACAAGCACCACCTCACAACAGCGGGTTCG 1557
||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct 1629 ACATTCTCCATACACAGATAGAAATGAATACACAAGCACCACCTCACAACAGTGGGTTCG 1688
Query 1558 AGG---CCCCAGGAGGAGTACTTCAACCCCTTGGTTTACTCGGAAATGAAGACGGCGTAG 1614
||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1689 AGGAGGCCCCAGGAGGAGTACTTCAACCCCTTGGTTTACTCGGAAATGAAGACGGTGTAA 1748
Query 1615 CAGGGAGTGAGTTGTCTCAGTATCCGAGTGACATTATGTCTCCATTTAATGACCTGT-CG 1673
|||||||||||||| ||||||||| ||||| |||| |||||||||| | |||| || |
Sbjct 1749 CAGGGAGTGAGTTGCCTCAGTATCAGAGTGGCATTCTGTCTCCATTGACTGACTTGGAC- 1807
Query 1674 TTTGATTATGGTA-TT--G---ATGATTTCTCATGGTTTGGAGCTTAGTGTCTTGCCAtt 1727
||||| |||||| || | ||||||||||||||||||||||||||||||||||||||
Sbjct 1808 TTTGACTATGGTGGTTTTGGTGATGATTTCTCATGGTTTGGAGCTTAGTGTCTTGCCATT 1867
Query 1728 ttttttGG 1735
||||||||
Sbjct 1868 TTTTTTGG 1875
> AT3G20770.1 | Symbols: EIN3, AtEIN3 | Ethylene insensitive 3
family protein | chr3:7260432-7263352 REVERSE LENGTH=2413
Length=2413
Score = 195 bits (105), Expect = 2e-48
Identities = 481/656 (73%), Gaps = 52/656 (8%)
Strand=Plus/Plus
Query 249 CAAGCTCA-GAGGAAGAAAATGTCTAGAGCTCAAGATGGTATACTT-AAGTACATGTTGA 306
|||||| | |||||||||||||||||||||||||||||| || ||| ||||| |||||||
Sbjct 512 CAAGCT-AGGAGGAAGAAAATGTCTAGAGCTCAAGATGGGAT-CTTGAAGTATATGTTGA 569
Query 307 AGCTTATGGAAGTCTGCAAAGTTCGCGGGTTTGTTTATGGTATAATACCGGAAAA-GGGA 365
|| | |||||||| || |||| || || ||||||||||| || || ||||| || ||||
Sbjct 570 AGATGATGGAAGTTTGTAAAGCTCAAGGCTTTGTTTATGGGATTATTCCGGAGAATGGGA 629
Query 366 AAGCCCGTGAGC-GGTTCCTCTGACAATATAAGAGCTTGGTGGAAAGAGAAAGTGAAGTT 424
| ||| |||| | ||| | ||||| ||| |||| | ||||||||||| || || | |||
Sbjct 630 A-GCCTGTGA-CTGGTGCTTCTGATAATTTAAGGGAGTGGTGGAAAGATAAGGTTAGGTT 687
Query 425 TGATAAG-AACGGGCCAGCCGCAATTGCTAAATA-CGAAGAGGAGTGTT-TAGCTTTTGG 481
|||| | || || || || || ||| | || || | ||| |||| | || | ||
Sbjct 688 TGATC-GTAATGGTCCTGCGGCTATTACCAAGTATC-AAGCGGAGAATAATATCCCGGGG 745
Query 482 -TAAATCCGATGGGAATAG---GAATTCG-CAGTTTGTTC-T-CCA-G---GACCTGCAA 530
| || || || |||| || || | | | | || | || | || || |||
Sbjct 746 ATTCAT--GAAGGTAATAACCCGA-TTGGACCGACTCCTCATACCTTGCAAGAGCTTCAA 802
Query 531 GATGCAACT-TTAGGGTCTCTGTTATCTTCTTTGATGCAACATTGTGATCCTCCTCAAAG 589
|| | ||| || || || || || ||| | ||||||||||| |||||||||||||| ||
Sbjct 803 GACACGACTCTT-GGATCGCTTTTGTCTGCGTTGATGCAACACTGTGATCCTCCTCAGAG 861
Query 590 GAAGTAT-CCGCTGGAAAAAGGGACT-CCTCCGCCTTGGTGGCC-AACCGGGAATGAAGA 646
| || | || |||| ||||| | | ||||| || |||||||| || ||||| || ||
Sbjct 862 -ACGTTTTCCTTTGGAGAAAGG-AGTTCCTCCTCCGTGGTGGCCTAAT-GGGAAAGAGGA 918
Query 647 ATGGTGGG-TGAAACTCGGTCTGCCCAAA-AGCCAGAGTCCT-C-C-TTACA-GAAAACC 700
|||||| | || || ||| |||| ||| | | || ||||| | | ||||| ||| ||
Sbjct 919 TTGGTGGCCTCAA-CTTGGTTTGCCTAAAGATCAAG-GTCCTGCACCTTACAAGAAG-CC 975
Query 701 GCACGATCTCAAGAAGATGTGGAAGGTTGGAGTTTTAACGGCAGTGATCAATCATATGTT 760
|| ||| | |||||| |||||| || || ||||| || || || ||||| ||||||||
Sbjct 976 TCATGATTTGAAGAAGGCGTGGAAAGTCGGCGTTTTGACTGCGGTTATCAAGCATATGTT 1035
Query 761 GCCTGATATTGCAAAGATTAAG-AGGCAT-GTTCGCCAGTCGAAATGTTTACAGGACAAG 818
||||||||||| ||||| | | || | || | || || |||||||| ||||| |||
Sbjct 1036 TCCTGATATTGCTAAGATCC-GTAAGC-TCGTGAGGCAATCTAAATGTTTGCAGGATAAG 1093
Query 819 ATGACAGCTAAAGAGAGTGCGATTTGG-TTGGCGGTT-TTGAACCAAGAGGAATCC 872
||||| |||||||||||||| | ||| ||| | || || |||||||| || |||
Sbjct 1094 ATGACTGCTAAAGAGAGTGCTACCTGGCTTG-CTATTATT-AACCAAGAAGAGTCC 1147
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85792731405
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5