BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926756
Length=247
Score E
Sequences producing significant alignments: (Bits) Value
AT1G73790.1 | Symbols: | Protein of unknown function (DUF3743)... 309 8e-84
> AT1G73790.1 | Symbols: | Protein of unknown function (DUF3743)
| chr1:27744672-27745377 FORWARD LENGTH=507
Length=507
Score = 309 bits (167), Expect = 8e-84
Identities = 195/208 (94%), Gaps = 3/208 (1%)
Strand=Plus/Plus
Query 20 TATGAATCAGGAAGCAGCTGAAACAGCGAGAGAGTCGCTGGAGCTAGTGTTTCGGATGTC 79
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 148 TATGAATCAGGAAGCAGCTGAAACAGCGAGAGAGTCACTGGAGCTGGTGTTTCGGATGTC 207
Query 80 CAACATCTTGGAGACAGGGCTTGATCGACATACTTTGTCTGTTCTCATAGCTCTTTGCGA 139
||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 208 GAACATCTTGGAGACAGGTCTTGATCGACATACTTTGTCTGTTCTTATAGCTCTTTGCGA 267
Query 140 CATTGGTCTTAACCCTGAGGCTCTTGCTACTCTCGTCAAGGAGCTTCGCAGAGATTCTGC 199
||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||
Sbjct 268 TATTGGTCTTAACCCTGAGGCTCTCGCTACTCTCGTCAAGGAGCTTCGTAGGGATTCTGC 327
Query 200 TACAACAACAACAACTACGGTAGATTAA 227
|||||||||||| |||||| ||||||
Sbjct 328 TACAACAACAAC---TACGGTTGATTAA 352
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 11209708027
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5