BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926757
Length=1391
Score E
Sequences producing significant alignments: (Bits) Value
AT1G73805.1 | Symbols: | Calmodulin binding protein-like | chr... 2061 0.0
> AT1G73805.1 | Symbols: | Calmodulin binding protein-like | chr1:27745427-27749178
REVERSE LENGTH=1690
Length=1690
Score = 2061 bits (1116), Expect = 0.0
Identities = 1302/1388 (94%), Gaps = 28/1388 (2%)
Strand=Plus/Plus
Query 21 ATGGCAGGGAAGAGGTTATTCCAAGATCTTGATTCCGACCAAGAAAATAAGTCCGAGAAA 80
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 1 ATGGCAGGGAAGAGGTTATTTCAAGATCTTGATTCTGACCAAGAAAATAAGTCCGAGAAA 60
Query 81 CGGATTAAATCTG---TACCATCCC-T---T-GCC----T-C--TGTGTTTGGAGCATTG 125
||||||||||||| ||||||||| | | ||| | | ||||||||||||||||
Sbjct 61 CGGATTAAATCTGTACTACCATCCCTTGCCTCGCCAATTTCCAGTGTGTTTGGAGCATTG 120
Query 126 ATCACAGAAAACACCCTTAAGAGCTTTTCTTCAGCCCTAGAGCCCGTTCTTAGAAAAGTT 185
||| |||||||||||||| | ||| | | ||||||||||||| |||||||||||
Sbjct 121 ATCTCAGAAAACACCCTT-----C-GTTC-T--GTCCTAGAGCCCGTTATTAGAAAAGTT 171
Query 186 GTAAGACAAGAAGTGGAATATGGAATTAGTAAACGATTCCGA-TATTCTCGGTCATCGTC 244
|||||||||||||||||||||||||||||||||||||| ||| || ||||||||||||||
Sbjct 172 GTAAGACAAGAAGTGGAATATGGAATTAGTAAACGATTTCGATTA-TCTCGGTCATCGTC 230
Query 245 TTTCCGTATCGAAGCTCCGGAAGAGTCTACTCCGACATTCAAGCTAATGTTCCGTAAGAG 304
||||||||||||||||||||| | | ||||||||||| | |||||||| ||||||||||
Sbjct 231 TTTCCGTATCGAAGCTCCGGAGGCGACTACTCCGACACTGAAGCTAATTTTCCGTAAGAA 290
Query 305 CTTAAGT-ACACCAATATTCACCGGGAGTAAAATCATTGACGTGGACAACAATCCACTTG 363
||||| | ||||||||||| || ||||||||||||| |||||||||||||||||||||||
Sbjct 291 CTTAA-TGACACCAATATTTACAGGGAGTAAAATCAGTGACGTGGACAACAATCCACTTG 349
Query 364 AGATTATCCTTGTTGATGATTCAAACATTCCGGTGAATCTCGACCGTTCGATCAAACTAG 423
||||||||||||||||||| ||||||| |||||||||||| ||||| | ||||||||||
Sbjct 350 AGATTATCCTTGTTGATGACTCAAACAAGCCGGTGAATCTCAACCGTCCAATCAAACTAG 409
Query 424 ACATCGTTGCTCTTCACGGAGATTTTCCTTCGGGTGATAAATGGACTAGTGATGAGTTTG 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 410 ACATCGTTGCTCTTCACGGAGATTTTCCTTCGGGTGATAAATGGACTAGTGATGAGTTTG 469
Query 484 AGAGTAACATCATCAAAGAAAGAGATGGGAAACGGCCGTTACTTGCTGGAGAAGTAAGTG 543
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 470 AGAGTAACATCATCAAAGAAAGAGATGGGAAACGGCCGTTACTTGCCGGAGAAGTAAGTG 529
Query 544 TGACGGTGAGGAACGGCGTTGCAACGATCGGAGAGCTTGTGTTCACAGATAATTCGAGTT 603
|||||||||| |||||||||||||| |||||||| ||||||||||||| ||||||||||
Sbjct 530 TGACGGTGAGAAACGGCGTTGCAACAATCGGAGAAATTGTGTTCACAGACAATTCGAGTT 589
Query 604 GGATTCGTAGCCGTAAGTTTAGAATCGGTGCGAAAGTTGCCAAAGGGAGTAGCGGTCAAG 663
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 590 GGATTCGTAGCCGTAAGTTTAGAATCGGTGCGAAAGTTGCGAAAGGGAGTAGCGGTCAAG 649
Query 664 GCGTTGCGGTTTGTGAAGCGATGACTGAAGCGATTGTTGTTAGAGATCATCGTGGAGAAT 723
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 650 GCGTTGTGGTTTGTGAAGCGATGACTGAAGCGATTGTTGTTAGAGATCATCGTGGAGAAT 709
Query 724 TGTACAAGAAACATCACCCACCAATGTTAGAAGACGAAGTGTGGCGGCTAGAGAAGATAG 783
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 710 TGTACAAGAAACATCACCCACCAATGTTAGAAGACGAAGTGTGGCGGCTAGAGAAGATAG 769
Query 784 GCAAAGATGGGGCCTTTCACAAGAAGCTCTCCTCTAAACACATCAACACTGTCCAAGACT 843
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 770 GCAAAGATGGGGCCTTTCACAAGAAGCTCTCCTCTCGCCACATCAACACTGTCCAAGACT 829
Query 844 TTTTGAAACTATCCGTCGTTGACGTCGACGAACTCCGTCAGATTTTGGGCCCTGGAATGT 903
|||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 830 TTTTGAAACTATCCGTCGTTGACGTCGACGAACTCCGTCAGATTCTGGGGCCTGGAATGT 889
Query 904 CTGATAGAAAGTGGGAAGTAACATTGAAACATGCTAGAGAGTGTATTATGGGAAATAAGT 963
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 890 CTGATAGAAAGTGGGAAGTAACATTGAAACATGCTAGAGAGTGTATTTTGGGAAATAAGT 949
Query 964 TATACATTTCTAGAGGACCGAATTTTTTCATGATTTTGAATCCGATATGCGAAGTCATGA 1023
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 950 TATACATTTCTAGAGGACCGAATTTTTTCATGATTTTGAATCCGATATGCGAAGTTATGA 1009
Query 1024 AAGCACTTATCGATGGTCATGTTCTCTCTAGTCAAGAATCCCTGAATCAGCCCTATGTTA 1083
||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||
Sbjct 1010 AAGCACTTATCGATGGTCATGTTCTCTCTAGTCAAGAATCCCTCAACCAGCCCTACGTTA 1069
Query 1084 AGAACTTAGTTCGAGATGCTTACTCAAAAGGAAACTTGTTAGAAGTGGGCGAAGGAACAG 1143
|||||||||||||||||||||||||||| || ||||| ||||||||||||||| ||||||
Sbjct 1070 AGAACTTAGTTCGAGATGCTTACTCAAAGGGGAACTTTTTAGAAGTGGGCGAACGAACAG 1129
Query 1144 CGAACGAGGCTGCTCTTTTGACACAAGGTGATAATTTGGACCAACAATATGTTGCGGGCC 1203
|||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |||
Sbjct 1130 CGAACGAGGCTGCTCTTTTGACACAAGGTGATGATTTGGACCAACAATATGCTGCGAGCC 1189
Query 1204 ATTACGACAACATCGAAATCAATAGATCATCTCAACAAAACGGATATGTTCAAGAGAGAA 1263
| ||| | |||||||||||| ||| ||||| ||||||||||||||||||||||||||||
Sbjct 1190 ACTACCAAAACATCGAAATCGATAAATCATATCAACAAAACGGATATGTTCAAGAGAGAT 1249
Query 1264 CTACAAACAATTTGGAGATAGTAAACGAAGGGTATATAACGACTCAAGCGGAATTCAATA 1323
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1250 CTACAAACAATTTGGAGATAGTAAACGAAGGGTATATAACGACTCCAGCGGAATTCAATA 1309
Query 1324 TATGTTTCACCGGATCTTCGTCTCAAAACCATATAAACCCTTTCTAAATCCTCATCTGCG 1383
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 1310 TATGTTTCACCGGATCTTCGTCTCAAAATCATATAAACCCTTTCTAAATCCTCATCTACG 1369
Query 1384 TTAGTATT 1391
||||||||
Sbjct 1370 TTAGTATT 1377
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68523743925
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5