BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926758
Length=1298
Score E
Sequences producing significant alignments: (Bits) Value
AT1G73810.1 | Symbols: | Core-2/I-branching beta-1,6-N-acetylg... 1823 0.0
> AT1G73810.1 | Symbols: | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase
family protein | chr1:27752400-27755297
REVERSE LENGTH=1452
Length=1452
Score = 1823 bits (987), Expect = 0.0
Identities = 1205/1307 (92%), Gaps = 28/1307 (2%)
Strand=Plus/Plus
Query 1 GTTTCAGCAGACTCA-AAAATAATGAAGAAGAGCCAAGAAACGCAAGAAGACTCTCTACA 59
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 68 GTTTCAGCAGACTCACAAAATAATGAAAAAGAGCCAAGAAACGCAAGAAGACTCTCTTCA 127
Query 60 ACAAGAAAGTCGAT-ATCAACTTCACCAAATCTTCATATCGAAGATATTCAA-ATCTCAT 117
|||||||||||| | ||||||||||||||||| ||||||| |||||||| || |||||||
Sbjct 128 ACAAGAAAGTCG-TCATCAACTTCACCAAATCGTCATATCCAAGATATT-AAGATCTCAT 185
Query 118 AGATTCTTCC-AAGCTCTCGTGTTGTATTCGTTGCTTATCGGTTTCGGATTCGGGCTAGG 176
|||||||||| || | ||||| ||||||||||| |||||||||||||||||||| || ||
Sbjct 186 AGATTCTTCCAAAAC-CTCGTCTTGTATTCGTTTCTTATCGGTTTCGGATTCGGACTCGG 244
Query 177 CTTCATACTCAACGTCCATATAAGAAACGTCTCTTTCAATCCCCAACTCTTTCGTCTGTC 236
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 245 CTTCATACTCAACGTCCATATAAGAAACGTCTCTTTCAATCCTCAACTCTTTCGTCTATC 304
Query 237 TGCTCTcccccccTCCCTCTCATCTTCCTTCTCTACACCGCTTCAACCGCAGCCAGAGAA 296
| | ||| |||| | | || | || | || | | |||||||||||||||||||||| ||
Sbjct 305 TTCACTCTCCCCAT-CATC-CTTC-T-CTACAC--CACCGCTTCAACCGCAGCCAGA-AA 357
Query 297 -AGTCGTTTCCTTGAACGATACGGTTGTTGCGACTGATGATGATGA-C--G-A--AGGGC 349
||||||| ||||||| |||||||||||||||||| |||||||||| | | | |||||
Sbjct 358 TAGTCGTTCCCTTGAATGATACGGTTGTTGCGACTAATGATGATGACCATGAAGTAGGGC 417
Query 350 AAAAGGGTCATTCTCTGGTGAAGCCGGAGAACGTGATGCACAACATGACGGAGGAGGAAC 409
|||||||||||| |||| ||| ||||||||||||| |||| |||||||||||||||||||
Sbjct 418 AAAAGGGTCATTATCTGATGATGCCGGAGAACGTGGTGCATAACATGACGGAGGAGGAAC 477
Query 410 TATTTCTACGTGCATCAAAGATTCAAGAAAAGACGTTAAAGAAGACAAAGAAAGTGGCGT 469
| || |||||||| || |||||||||||||||||||| |||| ||||||||||| |||||
Sbjct 478 TCTTGCTACGTGCTTCGAAGATTCAAGAAAAGACGTTGAAGATGACAAAGAAAGCGGCGT 537
Query 470 TTATGTTCTTGACTAGAGGGAAGCTTCCTTTGGCTAAACTGTGGGAGAGATTTTTCAAAG 529
|||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 TTATGTTCCTGACGAGAGGGAAGCTTCCTTTGGCTAAACTGTGGGAGAGATTTTTCAAAG 597
Query 530 GCCATGAAGGTCTTTTCTCTATTTACATTCATACGAGTGACCCTTTTTACGTTGACGATG 589
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 598 GCCATGAAGGTCTTTTCTCTATTTACATTCATACGAGTGACCCTTTTTACTTTGACGATC 657
Query 590 ATATC-CCCGAAACTTCGCCGCTTTATCGCCGGAGGATTCCAAGCAAGGAAGTGGGATGG 648
||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 658 ATA-CGCCCGAAACTTCGCCGTTTTATCGCCGGAGGATTCCAAGCAAGGAAGTGGGATGG 716
Query 649 GGAATGGTGAGCATGGTGGAGGCTGAGCGACGGCTACTGGCAAATGCTCTGCTTGACGCC 708
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 717 GGAATGGTGAGCATGGTGGCGGCTGAGCGACGGCTACTGGCAAATGCTCTGCTTGACGCC 776
Query 709 GGAAACCACCGTTTTGTCCTTCTCTCGGAATCGGACATTCCTCTCTTTAACTTCTCCACT 768
||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 777 GGAAACCACCGCTTCGTCCTCCTCTCGGAATCGGACATTCCTCTCTTTAACTTCTCCACC 836
Query 769 ATTTACTCTTACCTCACAAACTCTCAACACTCCTACGTCGACGTCTACGACCTTCCCGGA 828
|||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 837 ATTTACTCTTACCTCATAAACTCGCAACACTCCTACGTCGACGTCTACGACCTTCCCGGA 896
Query 829 CCAGCAGGTCGCGGCCGCTACAACCGCCGTATGTCACCAGTCATCAGCCGC-CGCAACTG 887
||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 897 CCAGCAGGTCGCGGCCGCTACAACCGCCGTATGTCACCAGTCATCAGCCGCAC-CAACTG 955
Query 888 GCGAAAAGGCTCGCAGTGGTTCGAGATAGACCGTGAGGTAGCTTTAGCCGTAGTCTCGGA 947
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 956 GCGAAAAGGCTCTCAGTGGTTCGAGATAGACCGTGAGGTAGCTTTAGCCGTAGTATCGGA 1015
Query 948 CACAACTTACTTTCCTGTGTTCAAGAAACATTGCCTTTCGAATTGTTATTCCGACGAGCA 1007
|||||||||||||||||||||| ||||| ||||||||| |||||||||| ||||||||||
Sbjct 1016 CACAACTTACTTTCCTGTGTTCGAGAAATATTGCCTTTGGAATTGTTATGCCGACGAGCA 1075
Query 1008 TTACTTGGCGACATTAGTCCACGTCATGTTTCCAGGGAAGAACGCGAACCGGTCACTGAC 1067
||||||| | ||||| ||||||| ||||||||| |||||||| |||||||||||||| ||
Sbjct 1076 TTACTTGTCAACATTTGTCCACGCCATGTTTCCGGGGAAGAATGCGAACCGGTCACTAAC 1135
Query 1068 GTGGACGGATTGGTCACGGAGAGGGCCACATCCAAGAAAGTACACACGGGGGTCGGTGAC 1127
|||||||||||||||||||||||| |||||||| || ||||||||| || ||||||||||
Sbjct 1136 GTGGACGGATTGGTCACGGAGAGGTCCACATCCGAGGAAGTACACAAGGCGGTCGGTGAC 1195
Query 1128 GGGGGAGTTTTTGCTGAGGGTGAGGAATAGAGAACAAGGGTGTGTGTATAATGGGAAGAA 1187
||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1196 AGGGGAGTTTCTGCGGAGGGTGAGGAATAGAGAACAAGGGTGTGTGTATAATGGGAAGAA 1255
Query 1188 GAGCGAGAAATGTTTCTTGTTCGCTAGGAAGTTCGATGCTGGTTGTTTGGATAAGTTGTT 1247
|||||||||||||| ||||||||||||||||||||||| | || |||||||||||||||
Sbjct 1256 GAGCGAGAAATGTTACTTGTTCGCTAGGAAGTTCGATGGTAGTACTTTGGATAAGTTGTT 1315
Query 1248 ATATTTTGCTCATAGGGTTATGGGATTTTAGT---CTTCGTTATAAC 1291
||||||||||||||| |||||||||||||| | ||||||||||||
Sbjct 1316 ATATTTTGCTCATAGTGTTATGGGATTTTAATTTTCTTCGTTATAAC 1362
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63855093240
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5