BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926759
Length=624
Score E
Sequences producing significant alignments: (Bits) Value
AT1G73820.1 | Symbols: | Ssu72-like family protein | chr1:2775... 944 0.0
> AT1G73820.1 | Symbols: | Ssu72-like family protein | chr1:27755512-27757211
REVERSE LENGTH=863
Length=863
Score = 944 bits (511), Expect = 0.0
Identities = 573/604 (95%), Gaps = 0/604 (0%)
Strand=Plus/Plus
Query 21 CGATGAGGTTCCGGTACGCTATGGTATGTTCGTCGAATCAGAACCGGAGCATGGAAGCTC 80
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 52 CGATGAGGTTCCGGTACGCAATGGTTTGTTCGTCGAATCAGAACCGGAGCATGGAAGCTC 111
Query 81 ACGCTCTTCTGAAGAGGCAAGGTCTCGACGTTGCTTCGTACGGGACTGGGTCTCATGTAA 140
|||||||||| ||||| ||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 112 ACGCTCTTCTTAAGAGACAAGGACTCGACGTTGCTTCGTACGGGACTGGGTCACATGTAA 171
Query 141 AACTACCTGGACCATCGGTCAGAGAGCCTAACGTCTACGACTTTGGAACTCCTTACAAGC 200
|||||||||||||||| | |||||||| ||||| |||||||||||||||||||||||||
Sbjct 172 AACTACCTGGACCATCTCTGAGAGAGCCAAACGTTTACGACTTTGGAACTCCTTACAAGC 231
Query 201 AGATGTTCGAAGAGCTCAGGCGCAAAGATCCTGAACTTTACAAGCGGAATGGTATATTAC 260
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||| || |
Sbjct 232 AGATGTTCGATGAGCTCAGGCGCAAAGATCCTGAACTATACAAGCGGAATGGTATTTTGC 291
Query 261 AGATGCTTAAGAGGAATTTATCTGTGAAGCTTGCTCCTCAAAGATGGCAAGATAATGCTG 320
||||| |||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 292 AGATGATTAAGAGGAATTTATCCGTGAAACTTGCTCCTCAAAGATGGCAAGATAATGCTG 351
Query 321 GTGATGGTGTGTTTGATGTGGTTATGACTTTTGAGGAAAAGGTTTTTGATTCTGTCCTTG 380
|||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||
Sbjct 352 GTGATGGTGTGTTTGATGTGGTTATGACTTTTGAAGAAAAGGTTTTCGATTCAGTCCTTG 411
Query 381 AAGATCTTAATAACAGAGAACAGTCGCTTATGAAAACCATACTTGTGATGAACTTGGAGG 440
||||||| || ||||||||||| || |||| |||||| ||||||||||||||||||||||
Sbjct 412 AAGATCTCAACAACAGAGAACAATCACTTACGAAAACAATACTTGTGATGAACTTGGAGG 471
Query 441 TTAAAGACAACCACGAAGAAGCAGCTATTGGTGGCCGACTTGCCTTGGAACTCTGTCAAG 500
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 472 TTAAAGATAACCACGAAGAAGCAGCTATAGGTGGCCGACTTGCCTTGGAACTCTGTCAAG 531
Query 501 AGATTGAAGGGAATGAAACATGGGAAGATACGATCGATGACATTGTTGCGGGTTTTGAAA 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 532 AGATTGAAGGGAATGAAACATGGGAAGATACGATCGATGACATTGTTGCGGGTTTTGAAA 591
Query 561 AACAACACAGGCGGAAACTGGTCTACAGCATCTCATTCTACTGAAGATACCATCAGCATT 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 592 AACAACACAGGCGGAAACTGGTCTACAGCATCTCATTCTACTGAAGATACCATCATCAGT 651
Query 621 CGCA 624
||||
Sbjct 652 CGCA 655
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30090254053
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5