BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926763
Length=1724
Score E
Sequences producing significant alignments: (Bits) Value
AT1G73850.1 | Symbols: | Protein of unknown function (DUF1666)... 2575 0.0
> AT1G73850.1 | Symbols: | Protein of unknown function (DUF1666)
| chr1:27767263-27770457 FORWARD LENGTH=2091
Length=2091
Score = 2575 bits (1394), Expect = 0.0
Identities = 1624/1734 (94%), Gaps = 20/1734 (1%)
Strand=Plus/Plus
Query 1 GAAGAAGAAGGGGAAGAATTCAAGATGTCGTGTAACACAAGTTACCATGTGATATCTAGA 60
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 317 GAAGAAGAAGGGGAAGAACTCAAGATGTCGTGTAACTCAAGTTACCATGTGATATCTAGA 376
Query 61 GATCAAAATCCAGATTTGATAGCTGATATAGGGGACGACGGAGAATCTTTAGTGTTTTAC 120
|||| |||||| ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 377 GATCCAAATCCGGATTTGATAGCTGATATAGCAGACGACGGAGAATCTTTAGTGTTTTAC 436
Query 121 AATAATAACTCTCAAGGTGGACTATGTAATCAACACACGAAGGAGGAGTTCAATAATGTC 180
||||||| |||||||| ||| || ||||||||||||| | |||||||||||||||||
Sbjct 437 AATAATATTTCTCAAGGAGGAGTAAATAATCAACACACG-A--AGGAGTTCAATAATGTC 493
Query 181 TATCAAACTCATGAACAC---G-A-A-GAAGAAGATGATCAAGATTCCAACACTTCTTCT 234
|||||||||||||||||| | | | |||||||||||||||||||| ||||||||||||
Sbjct 494 TATCAAACTCATGAACACGAAGAAGAGGAAGAAGATGATCAAGATTCTAACACTTCTTCT 553
Query 235 ACGGAGGAACACTTTTCTTCTGCCAATGTTTCTCCTTATCACAGCGAATCATCAGTAGAA 294
|| ||||| ||||||||||||||||||||||||||||||| ||| ||||||||| |||||
Sbjct 554 ACAGAGGAGCACTTTTCTTCTGCCAATGTTTCTCCTTATCGCAGTGAATCATCAATAGAA 613
Query 295 GAGGAAGATGATGGCGTTGAAGATCTTCCTGACGATCGTTATGATGATGATGACGAAGAT 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 614 GAGGAAGATGATGGCGTTGAAGATCTTCCTGACGATCGTTATGATGATGATGACGAAGAT 673
Query 355 GAAGAGGTAGGAGGAGTGTCACGATACGATGTCGTTGAGGATTTGGTTCGTAAGCAACCA 414
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 674 GAAGAGGTAGGAGGAGTGTCACGATACGACGTCGTTGAGGATTTGGTTCGTAAGCAACC- 732
Query 415 AATACTACTACTAGTACTCGTGGTCCCTCTCGTTTCCAAAGTGGTTTGGTGTTCAATGAC 474
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 733 AA-A-TACTACTAGTACTCGTGGTCCCTCTCGTTTCCAAAGTGGTTTGGTGTTCAATGAC 790
Query 475 AAAAGCTACAATGCAGGAGAGTTTGTGTCTAATGGAGGAATCAAGAATGATGTTGACGAG 534
||||| ||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 791 AAAAGTTACAATGCAAGAGAGTTTGTGTCCAATGGAGGAATCAAGAATGATGTCGACGAG 850
Query 535 ATACAGCCATCATCGGGGTTTTCCATgagagagatcaaagcagaggaattagaggaagag 594
||||||||||||||||| ||| |||||||||||| |||||||||||||||||||||||
Sbjct 851 ATACAGCCATCATCGGGCTTTGACATGAGAGAGATAAAAGCAGAGGAATTAGAGGAAGAA 910
Query 595 gaagaagaagagagaggagagaTATTCGGACAGTCATACACGAATGGGTCAACGTCAAAA 654
|||||||||||||||||| | ||||||||| |||||| |||||||||||||||||| |||
Sbjct 911 GAAGAAGAAGAGAGAGGACAAATATTCGGAGAGTCATGCACGAATGGGTCAACGTCGAAA 970
Query 655 AGCTCATCAGAATGGAGAAACTCTGTCAAAACCGACGACCCTTTCTCAACTTCCTCCCGC 714
|||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||| |||
Sbjct 971 AGCTCATCGGAATGGAGAAACTCTGTCAAAACTGACGACCCTTTCTCAACGTCCTCTCGC 1030
Query 715 CGGAGTTGCCCTAAATGGGAATCTTACACCGTCTTCCAAAAGTACGACGAAGAAATGACT 774
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1031 CGGAGTTGCCCTAAATGGGAATCTTACACCGTCTTCCAAAAGTACGACGAAGAAATGACT 1090
Query 775 TTTCTCACTAGAATCACTGCTCAAAAGCTTCACGAAACTGAATCGTTAAAGTCAATCATG 834
||||||||||||||| |||||||||||||||||||| | ||||| || |||||||| |||
Sbjct 1091 TTTCTCACTAGAATCTCTGCTCAAAAGCTTCACGAAGCAGAATCTTTGAAGTCAATTATG 1150
Query 835 GTGGAGCCAAGATCGATCTCGGAGAGGATCGTTCACAAGTTATCATCAAATGGATCACAC 894
|||||||||||||| ||||||||||||||||||||||||||||||||||| || | |||
Sbjct 1151 GTGGAGCCAAGATCTATCTCGGAGAGGATCGTTCACAAGTTATCATCAAACGG-T--CAC 1207
Query 895 AAGAAAAAACAACAACGTTATCCTGGTGGCAATGGGTCGAGACCAAACCCGTACGTGGAA 954
|||||||||||| ||| ||||| || |||||||||||||||||||||| |||||||||
Sbjct 1208 AAGAAAAAACAAAAACAATATCCAGGCAGCAATGGGTCGAGACCAAACCCTTACGTGGAA 1267
Query 955 CTAGAATCAGCTTACGTGGCACAGATATGTCTAACATGGGAAGCTCTAAGTTGGAACTAC 1014
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1268 CTAGAATCCGCTTACGTGGCACAGATATGTCTAACATGGGAAGCTCTAAGTTGGAACTAC 1327
Query 1015 AAAAACTTCGAGAGAAAAAGATCATCCAGGCTACGAAGCTTCAACGACGTCGGATGTCCG 1074
|||||||||||||||||||||||| ||| || |||||||||||||||||| ||||||||
Sbjct 1328 AAAAACTTCGAGAGAAAAAGATCAACCACGCAACGAAGCTTCAACGACGTAGGATGTCCC 1387
Query 1075 GCCGGCATCGCCGACCAGTTCCGTACGTTTCACATTCTTTTACAAAGATACGTGGAGAAT 1134
||||| ||||||||||| ||||||||||||||||||||||||||||||||||| || |||
Sbjct 1388 GCCGGAATCGCCGACCAATTCCGTACGTTTCACATTCTTTTACAAAGATACGTAGAAAAT 1447
Query 1135 GAGCCTTATGAACATGGAAGAAGACCAGAGATTTATGCCCGAATGAGAACTCTTGCGCCC 1194
|| ||||||||||||||||||||||||||||||||||| || ||| |||||||||| ||
Sbjct 1448 GAACCTTATGAACATGGAAGAAGACCAGAGATTTATGCTCGCATGCGAACTCTTGCTCCT 1507
Query 1195 AAATTGCTTCTTGTTCCTGAATACCAAGATTATGA-G--GAGGATGAGAAAGAAGAAGAG 1251
||||||||||||||||||||||||||||||||||| | ||||| ||||| ||||| |||
Sbjct 1508 AAATTGCTTCTTGTTCCTGAATACCAAGATTATGAGGAAGAGGAGGAGAAGGAAGACGAG 1567
Query 1252 AAAGAGGAGGGTTTCAGGTCGAGGATATCGTCAGCGTCGTTCTTGATGATAATGGAGGAA 1311
|| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1568 AACGAAGAGGGTTTCAGGTCGAGGATATCGTCAGCTTCGTTCTTGATGATAATGGAGGAA 1627
Query 1312 TGCATAAGAACATTCATGAATTTTCTCAAAGCGGATAAAGAGAAGCCTTGTCAAAAGATC 1371
||||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||
Sbjct 1628 TGCATAAGAACATTCATGAATTTTCTCCAAGCGGATAAAGAAAAGCCTTGTCAGAAGATC 1687
Query 1372 CTCAAAGCCTTTTTTGGGAGAAGTAAACGAGGCTCCGTTGATCCAACCCTTGTCCATCTC 1431
|||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 1688 ATCAAAGCCTTTTTTGGGAGAAGTAAACGAGGCCCCGTTGATCCAACCCTTGTACATCTC 1747
Query 1432 ATGAAGAAAGTCAACAAAAAGAAAAAGACGAAGCTGAAAGAGATGCGTCGAGGAGGAAAA 1491
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1748 ATGAAGAAAGTCAACACAAAGAAAAAGACGAAGCTGAAAGAGATGCGTCGAGGAGGGAAA 1807
Query 1492 TACATGAGGAAGAAGAAGATGAGTATAGAGGAAGAAATGGAGATATTGATGGG-TCTAAT 1550
|||||||||||||||||||||||||||||||| |||||||||||||||||||| | ||||
Sbjct 1808 TACATGAGGAAGAAGAAGATGAGTATAGAGGAGGAAATGGAGATATTGATGGGAT-TAAT 1866
Query 1551 AGACTTGAAAGTGGTGTCAAGAGTATTGAGAATGAAAGAAATGAACGAAGAGAATTTGCA 1610
||| ||||||||||| |||||||| || || ||||| |||||||||||||||||||||||
Sbjct 1867 AGATTTGAAAGTGGTTTCAAGAGTGTTAAGGATGAATGAAATGAACGAAGAGAATTTGCA 1926
Query 1611 TTGGTGTGAAGAGAAGATGAGCAAAGTTAAAATTATTCAAGGTGGAAAGGTGCTTCAAAG 1670
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1927 TTGGTGTGAAGAGAAGATGAGCAAAGTTAAAATTATTCAAGGTGGAAAGGTGCTTCAAAG 1986
Query 1671 AGATTCCACTCCACTTTTCTTTCCTCCACATTGACCCCACTATTTTAATCTAAT 1724
|||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1987 AGATTCCACTCCACTTTTCTTTCCTCCACATTGACCCCACTATTCTAATCTAAT 2040
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85240525410
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5