BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926767
Length=1464
Score E
Sequences producing significant alignments: (Bits) Value
AT1G73880.1 | Symbols: UGT89B1 | UDP-glucosyl transferase 89B1 ... 2215 0.0
> AT1G73880.1 | Symbols: UGT89B1 | UDP-glucosyl transferase 89B1
| chr1:27784981-27786804 FORWARD LENGTH=1824
Length=1824
Score = 2215 bits (1199), Expect = 0.0
Identities = 1367/1448 (94%), Gaps = 12/1448 (1%)
Strand=Plus/Plus
Query 4 CACTA-AAAATGCTCATTACGACAG-GAAACGAGGAAAACAACAAGCCGACAAAAACCCA 61
||||| |||| |||||||| || || | |||||||||||||||||||||||||| |||||
Sbjct 146 CACTAGAAAA-GCTCATTATGAAAGTG-AACGAGGAAAACAACAAGCCGACAAAGACCCA 203
Query 62 TGTCTTAATCTTCCCGTTTCCGGCGCAAGGCCACATGATTCCCCTCCTCGACTTCACCCA 121
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 204 TGTCTTAATCTTCCCATTTCCGGCGCAAGGTCACATGATTCCCCTCCTCGACTTCACCCA 263
Query 122 CCGCCTTGCTCTCCGCGGCGCCGCCGCCTTAACCATAACCGTCTTAGTCACTCCAAAAAA 181
|||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||||
Sbjct 264 CCGCCTTGCTCTCCGCGGCGGCGCCGCCTTAAAAATAACCGTCCTAGTCACTCCAAAAAA 323
Query 182 CCTTCCTTTTCTCTCTCCACTTCTCTCCGCCGTAAG-TAACATCGAAACACTTATCCTCC 240
|||||||||||||||||| |||||||||||||| || |||||||||| ||||||||||||
Sbjct 324 CCTTCCTTTTCTCTCTCCGCTTCTCTCCGCCGT-AGTTAACATCGAACCACTTATCCTCC 382
Query 241 CTTTTCCCTCTCACCCTTCAATCCCCTCCGGCGTCGAAAACGTTCAAGACTTACCTCCTT 300
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 383 CTTTTCCCTCCCACCCTTCAATCCCCTCCGGCGTCGAAAACGTCCAAGACTTACCTCCTT 442
Query 301 CAGGCTTCCCTTTAATGATCCACGCGCTTGGTAATCTCCACGCGCCGCTTCTCTCTTGGA 360
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 443 CAGGCTTCCCTTTAATGATCCACGCGCTTGGTAATCTCCACGCGCCGCTTATCTCTTGGA 502
Query 361 TTACTTCTCACCCTTCTCCTCCAGTAGCCATCGTCTCTGATTTCTTCCTTGGTTGGACCA 420
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 503 TTACTTCTCACCCTTCTCCTCCAGTAGCCATCGTATCTGATTTCTTCCTTGGTTGGACCA 562
Query 421 ATAACCTCGGAATCCCTCGTTTCGACTTCTCTCCTTCAGCTGCTATCACTTGCTGCATCC 480
| ||||||||||||||||||||||| |||||||| || |||||||||||||||||||| |
Sbjct 563 AAAACCTCGGAATCCCTCGTTTCGATTTCTCTCCCTCCGCTGCTATCACTTGCTGCATAC 622
Query 481 TCAATACTCTCTGGATCGAAATGCCCACCAAGATCAACGAAGATGACGATAACGAGATCC 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 623 TCAATACTCTCTGGATCGAAATGCCCACCAAGATCAACGAAGATGACGATAACGAGATCC 682
Query 541 TCCAGTTTCCCAAGATCCCGAATTGTCCAAAGTACCCTTTTAATCAGATCTCCTCTCTTT 600
|||| |||||||||||||||||||||||||| |||| |||| ||||||||||||||||||
Sbjct 683 TCCACTTTCCCAAGATCCCGAATTGTCCAAAATACCGTTTTGATCAGATCTCCTCTCTTT 742
Query 601 ACAGAAGTTACGTTCACGGAGATCCAGCTTGGGAGTTCATAAGAGACTCGTTTAGAGATA 660
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 743 ACAGAAGTTACGTTCACGGAGATCCAGCTTGGGAGTTCATAAGAGACTCCTTTAGAGATA 802
Query 661 ACGCGGCGAGTTGGGGACTCGTCGTGAACTCGATCACCGCCATGGAAGGTGTTTATCTCG 720
||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 803 ACGTGGCGAGTTGGGGACTCGTCGTGAACTCGTTCACCGCCATGGAAGGTGTTTATCTCG 862
Query 721 AGCATCTTAAGCGAGAGATGGGCCATGATTGTGTATGGGCCGTTGGCCCAATTCTTCCGT 780
| ||||||||||||||||||||||||||| |||||||||| || ||||||||| ||||||
Sbjct 863 AACATCTTAAGCGAGAGATGGGCCATGATCGTGTATGGGCTGTAGGCCCAATTATTCCGT 922
Query 781 TATCTGATGG-TAACCGTGGTGGCCCGACTTCTGTTTCTGTTGATCACGTGATGTCATGG 839
|||||| || ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 923 TATCTGG-GGATAACCGTGGTGGCCCGACTTCTGTTTCTGTTGATCACGTGATGTCGTGG 981
Query 840 CTTGACGCACGTGAGGATGACCACGTGGTGTACGTGTGCTTCGGAAGTCAAGCT-GTTTT 898
|||||||||||||||||| |||||||||||||||||||||| |||||||||| | |||||
Sbjct 982 CTTGACGCACGTGAGGATAACCACGTGGTGTACGTGTGCTTTGGAAGTCAAG-TAGTTTT 1040
Query 899 GACTAAAGAGCAGACTCTTGCGCTTGCCTCTGGGCTTGAGAAAAGCGGCGTCCATTTCAT 958
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1041 GACTAAAGAGCAGACTCTTGCACTCGCCTCTGGGCTTGAGAAAAGCGGCGTCCATTTCAT 1100
Query 959 ATGGGCCGTAAAAGAGCCGGTTGACGGA-GAGTCGCCACGTGGCAACATCTTAGACGGCT 1017
|||||||||||| ||||| ||||| | | || || |||||||||||||| | ||||| |
Sbjct 1101 ATGGGCCGTAAAGGAGCCCGTTGA-GAAAGACTCAACACGTGGCAACATCCTGGACGGTT 1159
Query 1018 TCGACGATCGTGTGGCTGGAAGAGGTCTGGTGATCAGAGGATGGGCTCCGCAAGTGGCTG 1077
|||||||||| |||||||| ||||||||||||||||||||||||||||| ||||| ||||
Sbjct 1160 TCGACGATCGCGTGGCTGGGAGAGGTCTGGTGATCAGAGGATGGGCTCCACAAGTAGCTG 1219
Query 1078 TGCTACATCACCGAGCCGTTGGCGCGTTTTTAACGCACTGTGGTTGGAACTCTGTGATTG 1137
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 1220 TGCTACGTCACCGAGCCGTTGGCGCGTTTTTAACGCACTGTGGTTGGAACTCTGTGGTGG 1279
Query 1138 AGGCGGTTGTTGCCGGCGTTTTGATGCTGACGTGGCCGATGAGAGCTGACCAGTACACAG 1197
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1280 AGGCGGTTGTCGCCGGCGTTTTGATGCTGACGTGGCCGATGAGAGCTGACCAGTACACTG 1339
Query 1198 ACGCGTCGCTGGTGGTCGACGAGTTGAAAGTTGGCGTGCGTGCTTGCGAAGGACCTGACA 1257
||||||| |||||||| || ||||||||||| || |||||||||||||||||||||||||
Sbjct 1340 ACGCGTCTCTGGTGGTTGATGAGTTGAAAGTAGGTGTGCGTGCTTGCGAAGGACCTGACA 1399
Query 1258 CGGTGCCTGACCCGGACAAGTTAGCCCGAGTTTTCGCTGATTCTGTGACCGGAAAGCAAA 1317
||||||||||||||||| ||||||| ||||||||||||||||| ||||||||||| ||||
Sbjct 1400 CGGTGCCTGACCCGGACGAGTTAGCTCGAGTTTTCGCTGATTCCGTGACCGGAAATCAAA 1459
Query 1318 CGGAGAGGATCAAAGCCGTGGAGCTGAGGAAAGCAGCATTGGATGCGATTCAAGAACGTG 1377
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1460 CGGAGAGGATCAAAGCCGTGGAGCTGAGGAAAGCAGCGTTGGATGCGATTCAAGAACGTG 1519
Query 1378 GGAGCTCCGTTAAGGATTTAGATGGATTTATCCAACATGTCGTTAGTTTAGGACTAAACA 1437
||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1520 GGAGCTCAGTGAATGATTTAGATGGATTTATCCAACATGTCGTTAGTTTAGGACTAAACA 1579
Query 1438 AATGATTT 1445
||||||||
Sbjct 1580 AATGATTT 1587
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72188383710
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5