BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926773
Length=1446
Score E
Sequences producing significant alignments: (Bits) Value
AT1G73950.1 | Symbols: | Transmembrane Fragile-X-F-associated ... 2278 0.0
AT1G18470.1 | Symbols: | Transmembrane Fragile-X-F-associated ... 1384 0.0
> AT1G73950.1 | Symbols: | Transmembrane Fragile-X-F-associated
protein | chr1:27799830-27804604 REVERSE LENGTH=1825
Length=1825
Score = 2278 bits (1233), Expect = 0.0
Identities = 1370/1435 (95%), Gaps = 14/1435 (1%)
Strand=Plus/Plus
Query 6 AGAGAAACAGAAAGACGATGAACTGTGGGAGAGTGTTGAAATCCGCACAAGCCTTGGTGG 65
||||| | |||||||||||||||||| |||||||||||||||||| |||||||| |||||
Sbjct 113 AGAGAGA-AGAAAGACGATGAACTGTTGGAGAGTGTTGAAATCCGTACAAGCCTCGGTGG 171
Query 66 CTCACTGCTTTCTCTTCTCTTTCACGCTCGCTTTGATGCTCAAGCTCGACCACTCCCTGT 125
||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| | |
Sbjct 172 CTCACTGCTTTCTCTTCTCTTTCACGCTCGCTTTGGTGCTCAAGCTCGATCACTCCAT-T 230
Query 126 -CTTACTCCTGGTGGGTTGTGTGTTTACCACTGTGGGCTTTTCATGCTGTTGTTGCAAGG 184
||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 231 ACTTACTCCTGGTGGGTTGTGTGTCTACCACTGTGGGCTTTCCATGCTGTTGTTGCAAGG 290
Query 185 GGAAGATTCTCTCTTCCTGCTCCAATCGCCCCTCGTAACCGTCATTGGGCTCCATGTCAT 244
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 291 GGAAGATTCTCGCTTCCTGCTCCAATCGCTCCTCGTAACCGTCATTGGGCTCCATGTCAT 350
Query 245 GCTATTGTCTCAACACCGTTGCTTATAGCTTTCGAATTGCTTCTCTGTGTATACCTCGAG 304
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 351 GCTATTGTCTCAACACCGTTGCTTATAGCTTTCGAATTACTCCTCTGTGTATACCTCGAG 410
Query 305 ACTGCATATGCTGATTCGCCGCCAGCTGTGAGCTTGAAGATTGTGTTTCTCCCTTTATTG 364
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 411 ACTGCATATGCTGATTCGCCGCCAGCTGTGAGCTTGAAGATTGTATTTCTCCCTTTATTG 470
Query 365 GCATTTGAAGTAATAATACTGGTGGACAATGCCAGAATGTGTCGGGCACTGATGCCTGGA 424
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 471 GCGTTTGAAGTAATAATACTGGTGGACAATGCGAGAATGTGTCGGGCACTGATGCCTGGA 530
Query 425 GATGAAGAGAGCGTGAATGATGAAGCAGTATGGGAAGCTCTTCCTCATTTCTGGGTTGCG 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 531 GATGAAGAGAGCGTGAATGATGAAGCAGTATGGGAAGCTCTTCCTCATTTCTGGGTTGCG 590
Query 485 ATTTCCATGGTGTTCTTTCTGGCTGCTACAGTCTTTACCCT-CTTAAAGCTGTCTGGCGA 543
|| ||||||||||||||||| |||||||||||||||||||| ||| ||||||||||||||
Sbjct 591 ATCTCCATGGTGTTCTTTCTCGCTGCTACAGTCTTTACCCTCCTT-AAGCTGTCTGGCGA 649
Query 544 TGTAGCTGCTCTTGGCTGGTGGGATTTATTCATTAATTTCGGAATTGCAGAGTGCTTTGC 603
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 650 TGTAGCTGCTCTTGGCTGGTGGGATTTATTCATTAATTTCGGAATCGCAGAGTGCTTTGC 709
Query 604 TTTTCTTGTTTGTACAAAATGGTCTAATCCAGTAATTCATAGAAGCTCACATGATAGAGA 663
|||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 710 GTTTCTTGTTTGTACAAAATGGTCTAATCCAGTGATTCATAGAAGCTCACGTGATAGAGA 769
Query 664 AACCGGGTCATCTTCTTCCAATATTAGATATCTTGACTGGAACAGTGGCCTTGGGGTTTT 723
||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 770 AACTGGGTCATCTTCTACCAATATTAGATATCTTGACTGGAACAGTGGCCTTGGGGTTTT 829
Query 724 TTCGGAAGACGATAGGAACCAAGATACAACATGTGGCCTGCAAGACTTTGGTGGTCATAT 783
||| ||||||||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct 830 TTCAGAAGACGATAGGAACCAAGAT---ACATGTGGCCTGCAAGACATTGGTGGTCATAT 886
Query 784 AATGAAAATTCCCCTCATTGTATTTCAAGTGGTACTTTGCATGCATCTAGAGGGGACTCC 843
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 887 AATGAAAATCCCCCTCATTGTATTTCAAGTGGTACTTTGCATGCATCTAGAGGGGACTCC 946
Query 844 TGAAGCTGCTAAGTATATACCTGTCCCTGTTCTGTTTTCTCCACTTTTCCTATTGCAAGG 903
|||||||||||||| |||| |||||||||| |||||||||||||||||||| ||||||||
Sbjct 947 TGAAGCTGCTAAGTCTATATCTGTCCCTGTCCTGTTTTCTCCACTTTTCCTTTTGCAAGG 1006
Query 904 CGTTGGTGTTCTATTTGCTGCTTCTAAATTAATAGAGAAGGTTGTTCTATTAATGCGCGG 963
|||||||||||||||||||||||||||| |||||||||||||||||||| | |||| ||
Sbjct 1007 CGTTGGTGTTCTATTTGCTGCTTCTAAACTAATAGAGAAGGTTGTTCTACTGCTGCGTGG 1066
Query 964 TGAAGATGA-AGCAGGATTATATTTTAGATTTTC-ATCGACAGCCCATGATTGCTTGGGT 1021
|||||||| | ||||||||||||||||| |||| ||| | ||| |||||||||||||||
Sbjct 1067 CGAAGATGATA-CAGGATTATATTTTAGA-TTTCTATCCAGAGCACATGATTGCTTGGGT 1124
Query 1022 TTCTTGCACCATGGATCCAGGCTACTAGGTTGGTGGTCAATTGATGAAGGAAGCCGGGAG 1081
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1125 TTCTTGCACCATGGATCCAGGCTACTAGGTTGGTGGTCAATTGATGAAGGAAGCCGGGAG 1184
Query 1082 GAGCAAGCTCGACTATACTTTGATCAAGACTCTGGTTACAATACCTTCTGTGGTCATCCT 1141
||| ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 1185 GAGGAAGCTCGACTATACTTTGATCAAGAATCTGGGTACAATACCTTCTGTGGTCATCCG 1244
Query 1142 CCTGAAATAGTCAAGAAAATGCCGAAGAAAGAGCTTGCTGAGGAGGTGTGGAGACTTCAA 1201
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1245 CCTGAAATAGTCAAGAAAATGCCGAAGAAAGAGCTTGCGGAGGAGGTGTGGAGACTTCAA 1304
Query 1202 GCAGCACTTGGTGAACAAACAGAAATCACGAAATTCAGCCAGCAGGAATATGAGAGACTG 1261
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1305 GCAGCACTTGGTGAACAAACAGAAATCACGAAATTCAGTCAGCAGGAATATGAGAGACTG 1364
Query 1262 CAAAATGAGAAAGTGCTGTGTAGGGTATGTTTTGAAAGAGAAATCAGTGTTGTACTGCTT 1321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1365 CAAAATGAGAAAGTGCTGTGTAGGGTATGTTTTGAAAGAGAAATCAGTGTTGTACTGCTT 1424
Query 1322 CCATGTAGACACCGAGTCCTCTGCAGAAACTGCTCAGACAAGTGTAAAAAATGTCCTTTC 1381
|||||||||||||| || |||||||||||||| |||||||||||||||||||| || |||
Sbjct 1425 CCATGTAGACACCGTGTTCTCTGCAGAAACTGTTCAGACAAGTGTAAAAAATGCCCCTTC 1484
Query 1382 TGCCGTATAAAC-ATCGAAGAGCGGCTCCCCGTATATGATGTTTAACATCTAACT 1435
|||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1485 TGCCGTATAA-CTATCGAAGAGCGGCTCCCCGTATATGATGTTTAACATCTAACT 1538
> AT1G18470.1 | Symbols: | Transmembrane Fragile-X-F-associated
protein | chr1:6356131-6360192 REVERSE LENGTH=1815
Length=1815
Score = 1384 bits (749), Expect = 0.0
Identities = 1177/1383 (85%), Gaps = 32/1383 (2%)
Strand=Plus/Plus
Query 33 GGAGAGTGTTGAAATCCG-CACAAGCCTTGGTGGCTCACT-GCTTT-CTCTTCTCTTTCA 89
|||||||| |||| | || ||||||||||| |||||| | | ||| ||||||| |||||
Sbjct 146 GGAGAGTGCTGAAGT-CGATACAAGCCTTGGCGGCTCA-TAG-TTTACTCTTCTGTTTCA 202
Query 90 CGCTCGCT-TTGATGCTCAAGCTCGACCACTCCCTGTCTTACTCCTGGTGGGTTGTGTGT 148
|||| | ||| |||| || ||||| ||| || | |||| ||| |||||| | |||| |
Sbjct 203 CGCT-TTTATTGGTGCTTAAACTCGATCACACCGTCTCTTCCTCATGGTGGATGGTGTTT 261
Query 149 TTACCACTGTGGGCTTTTCATGCTGTTGTTGCAAGGGGAAGATTCTCTCTTCCTGCTCCA 208
|| || ||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 262 TTCCCGCTGTGGGCTTTTCATGCAGTTGTTGCAAGGGGCAGATTCTCTCTTCCTGCTCCT 321
Query 209 ATCGCCCCTCGTAACCGTCATTGGGCTCCATGTCATGCTATTGTCTCAACACCGTTGCTT 268
| || || |||||||||||||||||||| || |||||| ||||| | |||||||| |||
Sbjct 322 GTTGCTCCACGTAACCGTCATTGGGCTCCTTGCCATGCTGTTGTCGCGACACCGTTACTT 381
Query 269 ATAGC-TTTCGAATTGCTTCTCTGTGTATACCTCGAGACTGCATATGCT-GATTCGCCGC 326
|||| ||| ||||| || |||||| |||||||||||| | | |||||| | || ||| |
Sbjct 382 GTAGCATTT-GAATTACTCCTCTGTATATACCTCGAGAGTTCTTATGCTCG-TTGGCCAC 439
Query 327 CAGCTGTGAGCTTGAAGATTGTGTTTC-TCCCTTTATTGGCATTTGAAGTAATAATACTG 385
||||||| || |||||||||| |||| | || || ||||| |||||| ||| |||||||
Sbjct 440 CAGCTGTCAGTTTGAAGATTG-CTTTCTTACCATTGTTGGCTTTTGAATTAACAATACTG 498
Query 386 GTGGACAATGCCAGAATGTGTCGGGCACTGATGCCTGGAGATGAAGAGAGCGTGAA-TGA 444
|| |||||| ||||||||||| ||| ||||||| ||||| || || ||| | || |||
Sbjct 499 GTAGACAATTTGAGAATGTGTCGAGCATTGATGCCAGGAGACGACGACAGCAT-AACTGA 557
Query 445 TGAAGCAGTATGGGAAGCTCTTCCTCATTTCTGGGTTGCGATTTCCATGGTGTTC-TTTC 503
||| ||| ||||||| || |||||||||||||||||||| ||||||||||||||| |
Sbjct 558 TGATGCAATATGGGAGGCACTTCCTCATTTCTGGGTTGCAATTTCCATGGTGTTCACGT- 616
Query 504 TGGCTGCTACAG-TCTTTACCCTCTTAAAGCTGTCTGGCGATGTAGCTGCTCTTGGCTGG 562
|||||||||| | ||||||||||| ||||||| |||||||| |||| ||||||||| |||
Sbjct 617 TGGCTGCTAC-GTTCTTTACCCTCCTAAAGCTTTCTGGCGACGTAGTTGCTCTTGGATGG 675
Query 563 TGGGATTTATTCATTAATTTCGGAATTGCAGAGTGCTTTGCTTTTCTTGTTTGTACAAAA 622
|||||| ||||||| ||||| |||||||| ||||||||||||||||||||||| ||||||
Sbjct 676 TGGGATCTATTCATAAATTTTGGAATTGCCGAGTGCTTTGCTTTTCTTGTTTGCACAAAA 735
Query 623 TGGTCTAATCCAGTAATTCATAGAAGCTCACATGATAGAGAAACCGGGTCATCTTCTTCC 682
||||| ||||||||||| ||||||||||||| || |||||||||||||||||||| ||
Sbjct 736 TGGTCCAATCCAGTAATCCATAGAAGCTCACGTGCCCGAGAAACCGGGTCATCTTCTACC 795
Query 683 AATATTAGATATCTTGACTGGAACAGTGGCCTTGGGGTTTTTTCGGAAGACGATAGGA-A 741
| ||| |||||||||||||||||||| ||||||| |||| | | ||||| |||| || |
Sbjct 796 AGTATCAGATATCTTGACTGGAACAGCGGCCTTGTGGTTGCTCCAGAAGAGGATA-GACA 854
Query 742 CCAAGATACAACATGTGGCCTGCAAGACT-TTGGTGGTCATATAATGAAAATTCCCCTCA 800
|||||||| | || || ||||||| | ||||||||||||| | ||||||||| | |
Sbjct 855 CCAAGATAGATGGTGCGGTTTGCAAGA-TATTGGTGGTCATATGTTAAAAATTCCCGTTA 913
Query 801 TTGTATTTCAAGTGGTACTTTGCATGCATCTAGAGGGGACTCCTG-AAGCTGCTAAGTAT 859
|| |||||||||| || ||||||||| || ||||||||||||||| ||| |||||| ||
Sbjct 914 TTTTATTTCAAGTTGTCCTTTGCATGTATTTAGAGGGGACTCCTGAAAG-AGCTAAGGAT 972
Query 860 ATACCTG-TCCCTGTTCTGTTTTCTCCACTTTTCCTATTGCAAGGCGTTGGTGTTCTATT 918
||| | | |||| || |||||||||||||| ||||||||||||||| | |||||||| ||
Sbjct 973 ATATC-GATCCCAGTACTGTTTTCTCCACTATTCCTATTGCAAGGCCTCGGTGTTCTCTT 1031
Query 919 TGCTGCTTCTAAATTAATAGAGAAGGTTGTTCTATTAATGCGCGGTGAAGATGAAGCAGG 978
||||||||||||| | |||||||| | || || ||| | ||||| |||| || | ||
Sbjct 1032 TGCTGCTTCTAAACTCCTAGAGAAGATCGTCCTCTTACTCCGCGGGGAAGCTGGTCCGGG 1091
Query 979 ATTATATTTTAGATTTTCATCGACAGCCCATGATTGCTTGGGTTTCTTGCACCATGGATC 1038
||| ||||||||||||||||| | ||||||||||||||||| |||||||||||||| ||
Sbjct 1092 ATTGTATTTTAGATTTTCATCAAGTGCCCATGATTGCTTGGGATTCTTGCACCATGGTTC 1151
Query 1039 CAGGCTACTAGGTTGGTGGTCAATTGATGAAGGAAGCCGGGAGGAGCAAGCTCGACTATA 1098
||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||| ||
Sbjct 1152 CAGGCTATTAGGTTGGTGGTCAATTGACGAAGGAAGCCGGGAGGAACAAGCTCGACTGTA 1211
Query 1099 CTTTGATCAAGACTCTGGTTACAATACCTTCTGTGGTCATCCTCCTGAAATAGTCAAGAA 1158
|||||||||||| |||||||||||||| ||| |||||||||| ||||| |||||||||||
Sbjct 1212 CTTTGATCAAGAATCTGGTTACAATACATTCAGTGGTCATCCGCCTGAGATAGTCAAGAA 1271
Query 1159 AATGCCGAAGAAAGAGCTTGCTGAGGAGGTGTGGAGACTTCAAGCAGCACTTGGTGAACA 1218
|||||| ||| |||| ||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1272 AATGCCAAAGGAAGATCTTGCAGAAGAGGTGTGGAGACTTCAAGCAGCACTTGGTGAACA 1331
Query 1219 AACAGAAATCACGAAATTCAGCCAGCAGGAATATGAGAGACTGCAAAATGAGAAAGTGCT 1278
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1332 AACAGAAATCACAAAATTCAGCCAGCAGGAATATGAAAGACTGCAAAATGAGAAAGTGCT 1391
Query 1279 GTGTAGGGTATGTTTTGAAAGAGAAATCAGTGTTG-TACTGCTTCCATGTAGACACCGAG 1337
||||||||| || ||||||| ||| |||||| ||| |||||||||||||||||||||| |
Sbjct 1392 GTGTAGGGTTTGCTTTGAAAAAGATATCAGT-TTGGTACTGCTTCCATGTAGACACCGTG 1450
Query 1338 TCCTCTGCAGAAACTGCT-CAGACAAGTGTAAAAAATGTCCTTTCTGCCGTATAAACATC 1396
| |||||||||| ||| | |||||||||||| || |||||| | || |||||| ||||
Sbjct 1451 TTCTCTGCAGAACCTG-TGCAGACAAGTGTACAACATGTCCAATATGTCGTATAGACATT 1509
Query 1397 GAA 1399
|||
Sbjct 1510 GAA 1512
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71284773900
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5