BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926777
Length=1979
Score E
Sequences producing significant alignments: (Bits) Value
AT1G73980.1 | Symbols: | Phosphoribulokinase / Uridine kinase ... 3236 0.0
> AT1G73980.1 | Symbols: | Phosphoribulokinase / Uridine kinase
family | chr1:27820149-27824036 REVERSE LENGTH=2211
Length=2211
Score = 3236 bits (1752), Expect = 0.0
Identities = 1902/1977 (96%), Gaps = 0/1977 (0%)
Strand=Plus/Plus
Query 1 TTCTTCTTCATTTGAAACTTTGGGGCAATGGTGCTCGATAGTTCTGTTGCTCTGTCGCCT 60
|||||||||||||| ||||||| |||||||| |||||||||||||||||||||||| |||
Sbjct 110 TTCTTCTTCATTTGCAACTTTGAGGCAATGGCGCTCGATAGTTCTGTTGCTCTGTCACCT 169
Query 61 CGCCGGCGGCATGGCCTGTTGCGGGATCAGGTTCAGCTTATTAAAAGAAAGGACTCTGGA 120
||||||||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 170 CGCCGGCGGCATGGCTTGTTGCGAGATCAGGTTCAGCTTATAAAAAGAAAGGACTCTGGA 229
Query 121 AGATATGAAATAGTTCCAATTGAGGATCCATTGTCTTTTGAAAAAGGTTTCTACGCTGTT 180
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 230 AGATATGAGATAGTTCCAATAGAGGATCCATTGTCTTTTGAAAAAGGTTTCTACGCTGTT 289
Query 181 ATTCGTGCTTGTCAATTATTGGCTCAGAAGAACGATGGGCTCATTTTGGTTGGGTTAGCT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 290 ATTCGTGCTTGTCAATTATTGGCTCAGAAGAACGATGGGCTCATTTTGGTTGGGTTAGCT 349
Query 241 GGTCCTTCTGGAGCTGGCAAAACCATTTTCACTGAGAAGATCCTCAATTTTATGCCTAGT 300
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 350 GGTCCTTCTGGAGCTGGCAAAACCATTTTCACTGAGAAGATTCTCAATTTTATGCCTAGT 409
Query 301 ATTGCTATCATTAACATGGACAACTATAATGATGGTACTCGTGTGATCGATGGAAACTTT 360
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 410 ATTGCTATCATTAACATGGACAACTATAATGATGGTACTCGTGTTATCGATGGAAACTTT 469
Query 361 GATGATCCACGGTTGACTGACTATGATACACTTCTTGACAATATACATGGCCTAAGGGAT 420
||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 470 GATGATCCAAGGTTGACTGACTATGATACACTTCTTGACAATATACATGGTCTAAGGGAT 529
Query 421 GGAAAACCTGTTCAGGTTCCAATATATGACTTTAAGTCGAGTTCTCGAATTGGTTACAGA 480
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 530 GGAAAACCTGTTCAGGTTCCAATATATGACTTCAAGTCGAGTTCTCGAATAGGTTACAGA 589
Query 481 ACACTTGAGGTGCCTAGCTCTCGCATTGTTATTCTTGAAGGCATATACGCTTTGAGTGAG 540
|| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 590 ACGCTTGAGGTGCCTAGCTCTCGCATTGTTATTCTAGAAGGCATATATGCTTTGAGTGAG 649
Query 541 AAACTACGGCCTTTGCTCGATCTTCGTGTCTCTGTCACTGGTGGAGTGCATTTTGATCTT 600
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 650 AAGCTACGGCCTTTGCTAGATCTTCGTGTCTCTGTCACTGGTGGAGTGCATTTTGATCTT 709
Query 601 GTCAAGCGTGTTTTGCGGGACATTCAACGTGCTGGCCAGGAACCTGAAGAAATTATTCAT 660
|| |||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 710 GTTAAGCGTGTTTTGCGGGACATTCAACGTGCTGGCCAGGAACCTGAAGAAATAATCCAT 769
Query 661 CAAATATCTGAGACGGTTTATCCTATGTACAAGGCGTTTATTGAACCTGATCTGAAGACA 720
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 770 CAGATATCTGAGACGGTTTATCCTATGTACAAGGCGTTTATTGAACCTGATCTGAAGACA 829
Query 721 GCTCAAATTAAGATCCTCAATAAGTTTAACCCCTTCAGTGGCTTTCAGAACCCAACATAT 780
||||| ||||||||||| |||||||| ||||| |||||||||||||||||||||||||||
Sbjct 830 GCTCAGATTAAGATCCTTAATAAGTTCAACCCATTCAGTGGCTTTCAGAACCCAACATAT 889
Query 781 ATTTTAAAGTCAACAAAGGCTGTAACACCAGAACAAGTGAAGGCAGCTCTGTCTGAAGAC 840
|||||||||||| |||||||||||||||| |||||| ||||||||||||| ||||||||
Sbjct 890 ATTTTAAAGTCATCAAAGGCTGTAACACCCGAACAAATGAAGGCAGCTCTATCTGAAGAT 949
Query 841 TCCAAGGAACGTACAGAGGAAACTTATGACATCTATCTGCTACCACCAGGCGAGGATCCT 900
| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 950 TTCAAGGAACGTACAGAGGAAACTTATGACATCTATCTGTTACCACCAGGCGAGGATCCT 1009
Query 901 GAAGCATGCCAATCCTACCTCAGAATGAGGAACCGGGATGGAAAATACAATCTCATGTTT 960
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1010 GAAGCATGCCAATCATACCTCAGAATGAGGAACCGAGATGGAAAATACAATCTCATGTTT 1069
Query 961 GAGGAGTGGGTTACAGATCGTCCATTTATTATATCACCCAGAATAACTTTTGAAGTTAGT 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1070 GAGGAGTGGGTTACAGATCGTCCATTTATTATATCACCCAGAATAACTTTTGAAGTTAGT 1129
Query 1021 GTTCGTCTTCTCGGAGGATTAATGGCACTGGGTTATACCATTGCAACAATCTTAAAAAGA 1080
||||||||||| ||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 1130 GTTCGTCTTCTTGGAGGATTAATGGCACTGGGTTATACCATTGCAACAATCCTGAAAAGA 1189
Query 1081 AAGAGTCATATCTTTGATGATGACAAGGTAATTGTGAAGACTGATTGGTTGGAACAACTG 1140
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1190 AAGAGTCATATCTTTGATGATGACAAGGTAATTGTGAAAACTGATTGGTTGGAACAACTG 1249
Query 1141 AATCGGACATATGTTCAGGTACAAGGTAAAGACCGTACCTTCGTCAAAAATGTGGCAGAC 1200
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1250 AATCGGACATATGTACAGGTACAAGGTAAAGACCGTACCTTTGTCAAAAATGTGGCAGAC 1309
Query 1201 CAACTTGGACTGGAAGGTTCATATGTTCCACATACATATATTGAACAGATACAGCTGGAG 1260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1310 CAACTTGGACTGGAAGGTTCATATGTTCCACATACATATATTGAACAGATACAGCTGGAG 1369
Query 1261 AGGCTTGTGAATGATGTTTTGGCTTTGCCAGATGACTTGAAAACAAAGCTTAGCTTAGAT 1320
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 1370 AGGCTTGTGAATGATGTTTTGGCTTTGCCAGATGACTTAAAAACAAAACTTAGCTTAGAT 1429
Query 1321 GATGATACAGTTTCTAGCCCTAAAGAAGCCCTCTCAAGAGCTTCTGTTGATAGTAGAATG 1380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1430 GATGATACAGTTTCTAGCCCTAAAGAAGCCCTCTCAAGAGCTTCTGTTGATAGTAGAATG 1489
Query 1381 AAATATCTTCACGGCGGTGTATCAAAGTCTTACACAAACCCAAGACACAAAGCCTTGCCT 1440
||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct 1490 AAATATCTTCACGGCGGCGTATCAAAGTCTTACACAAACCCAAGACACAAAGTCTTGCCT 1549
Query 1441 AACTTGACAAGACTTGCTGTTAACAATAGAATGTTAGATGCCAGAGCCCCTGCTTCACCG 1500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1550 AACTTGACAAGACTTGCTGTTAACAATAGAATGTTAGATGCCAGAGCCCCTGCTTCACCG 1609
Query 1501 GCCACTCTTCCAAATCAGGGTTTTATCACTCAGCTTTCAGACCAAATATCAACACTGAAC 1560
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1610 GCCACTCTTCCAAATCAGGGTTTTATCACTCAACTTTCAGACCAAATATCAACACTGAAC 1669
Query 1561 GAGAGGATGGATGAATTTACATCTCGCATTGAAGAGTTGAATTCCAAGATCCCGAACAGG 1620
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1670 GAGAGGATGGATGAATTCACATCCCGCATTGAAGAGTTGAATTCCAAGATCCCGAACAGG 1729
Query 1621 ATAGCTGCTTCAGGTAGCCAACATAACTTGGCATTACCAATCGAAAATGGTAATGGGTCC 1680
|||||| |||||||||| |||||||||||||| |||||||||||||| |||||||||||
Sbjct 1730 ATAGCTCCTTCAGGTAGTCAACATAACTTGGCTTTACCAATCGAAAACGGTAATGGGTCT 1789
Query 1681 GTCTTATCACTCTCCTCATCCGCATCTCAGCTCGTAAGGGAATCTCCTTTGATGGAAGAG 1740
||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1790 GTCTTATCATTCTCCGCATCCGCATCTCAGCTCGTAAGGGAATCTCCTCTGATGGAAGAG 1849
Query 1741 GTCATACTCATTGCTCGTGGACAGCGTCAGATAATGCTTCAAATGGACACACTGAGCAAT 1800
||| |||| ||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct 1850 GTCGTACTGGTTGCTCGTGGACAGCGTCAGATAATGCATCAAATGGACACACTGAGTAAT 1909
Query 1801 CTTCTTCGGGAGTATGTTGGAGAAAGGTCTCGCATAGAAAGACTCGACAGCAACAGAACA 1860
||||||||||||||||||||||||| | |||||||||| ||||||||||||| |||||||
Sbjct 1910 CTTCTTCGGGAGTATGTTGGAGAAAAGACTCGCATAGAGAGACTCGACAGCAGCAGAACA 1969
Query 1861 AACAGTAAAACACAAAACCTCGAATCCTCTACAGTACCTATTCTTCTTGGTTTGGCCATA 1920
||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 1970 AACAGTACAACACAAAACCTCGAATCCTCTACTGTACCGATTCTTCTTGGTTTGGCCATT 2029
Query 1921 GGCTGTGTGGGCATTTTTGCCTACAGTCGTCTGAAATAGTTGCTGTAACTATGAAAA 1977
|||||||||||||| ||||||||||||||||||||||||||||| ||||| || |||
Sbjct 2030 GGCTGTGTGGGCATCTTTGCCTACAGTCGTCTGAAATAGTTGCTCTAACTGTGGAAA 2086
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98041664385
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5