BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg926802 Length=217 Score E Sequences producing significant alignments: (Bits) Value AT4G31355.1 | Symbols: | unknown protein; Has 30201 Blast hits... 121 3e-27 > AT4G31355.1 | Symbols: | unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:15219697-15219822 REVERSE LENGTH=126 Length=126 Score = 121 bits (65), Expect = 3e-27 Identities = 98/113 (87%), Gaps = 5/113 (4%) Strand=Plus/Minus Query 105 AGACAGAGAC-CGAGATTCGGAA-AAACCAATTCTTTAGACAAAAGATTGGATTGGGTTA 162 |||||||||| ||| ||| ||| ||||||| ||||||||||||||||||||||||||| Sbjct 123 AGACAGAGACTTGAGGTTC-GAAGTAACCAATCCTTTAGACAAAAGATTGGATTGGGTTA 65 Query 163 TGTTTGGTGGAAGGAAAATGATACCCACGGCTTAAAACAATAGTCTTTAGACT 215 ||||||||| | |||||||| |||||||||||| |||| |||||| ||||| Sbjct 64 TGTTTGGTGCACGGAAAATGGTACCCACGGCTTCAAACT-TAGTCTG-AGACT 14 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 9701675557 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5