BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926813
Length=1090
Score E
Sequences producing significant alignments: (Bits) Value
AT1G74320.1 | Symbols: | Protein kinase superfamily protein | ... 1792 0.0
> AT1G74320.1 | Symbols: | Protein kinase superfamily protein
| chr1:27940673-27943204 FORWARD LENGTH=1585
Length=1585
Score = 1792 bits (970), Expect = 0.0
Identities = 1052/1092 (96%), Gaps = 3/1092 (0%)
Strand=Plus/Plus
Query 1 TGTGTGTGGCAATCAAATGACGATGGATGGTACTGAAAAGGATGTAGAGAATAAACAATA 60
||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 216 TGTGTGTGGCATTCAAATGACGATGGGTGGTACTGAAAAGAATGTAGAGAATAAACAATA 275
Query 61 TCGTTTGCCTCGAGAAGTCAAGGAAGCTTTACAAGCAATAGCATCAGAGTGGGAAGATGT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 276 TCGTTTGCCTCGAGAAGTCAAGGAAGCTTTACAAGCAATAGCATCAGAGTGGGAAGATGT 335
Query 121 GATTGATTCAAAGGCTCTGCAAGTTATTCCTTTAAAAGGTGCAATGACTAATGAGGTCTT 180
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 336 GATTGATTCAAAGGCTCTGCAAGTTATTCCTTTAAAAGGTGCAATGACAAATGAGGTGTT 395
Query 181 TCAGATCAAATGGCCAACTAGGGAAAAAGGTCCTTCTCGTAAGGTTTTGGTTAGGATTTA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 396 TCAGATCAAATGGCCAACTAGGGAAAAAGGTCCTTCTCGTAAGGTTTTGGTTAGGATTTA 455
Query 241 TGGTGAAGGTGTTGAGATTTTCTTTGATCGTGAGGATGAGATCAGGACATTTGAGTTTAT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 456 TGGTGAAGGTGTTGAGATTTTCTTTGATCGTGAGGATGAGATCAGGACATTTGAGTTCAT 515
Query 301 GTCAAAGCATGGTCATGGACCATTGTTGTTAGGACGGTTTGGCAATGGTCGTATCGAAGA 360
||| ||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||
Sbjct 516 GTCGAAGCATGGTCATGGACCTTTGTTGTTAGGTCGGTTTGGTAATGGTCGTATCGAAGA 575
Query 361 GTTCCTCCATGCGCGGACCTTATCTGCTTGTGACTTGCGTGATCCTGAAATATCTGGTCG 420
|||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 576 GTTCCTCCATGCACGGACCCTATCTGCTTGTGACTTGCGTGATCCTGAAATATCTGGTCG 635
Query 421 AATAGCAACTAGAATGAAGGAGTTTCACGGTCTTGAAATGCCTGGTGTGAAGAAGGCTTT 480
|||||||||||| |||||||||||||| ||||||||||||||||||| ||| ||||||||
Sbjct 636 AATAGCAACTAGGATGAAGGAGTTTCATGGTCTTGAAATGCCTGGTGCGAAAAAGGCTTT 695
Query 481 ACTTTGGGACAGATTACGAAATTGGCTCACTGCATGCAAGAGACTGGCTTCACCAGAAGA 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 696 GCTTTGGGACAGATTACGAAATTGGCTCACTGCATGCAAGAGACTGGCTTCACCAGAAGA 755
Query 541 AGCTAAGTCTTTTCGTCTCGATGTTATGGAGATGGAAATTAATTTGCTTGAGAAATCTCT 600
||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 756 AGCTAAGTCCTTTCGTCTCGATGTTATGGAGATGGAAATTAATATGCTTGAGAAATCTCT 815
Query 601 CTGTAACAATGATGAAAATATTGGATTTTGCCACAATGATTTACAGTATGGAAACATAAT 660
|| | |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 816 CTTTGACAATGATGAAAATATTGGATTTTGCCACAATGATTTACAGTATGGGAACATCAT 875
Query 661 GATGGATGAAGAAACCAAAGCAATCACCATCATTGATTATGAATATTCATGCTACAATCC 720
|||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 876 GATGGATGAAGAGACCAAAGCAATAACCATCATTGATTATGAATATTCATGCTATAATCC 935
Query 721 TGTGGCATATGACATTGCCAATCACTTCTGTGAGATGGCTGCCGATTACCACACTGAAAC 780
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 936 TGTGGCTTATGACATTGCCAATCACTTCTGTGAGATGGCTGCCGATTACCACACTGAAAC 995
Query 781 ACCTCACATCATGGATTATAGTAAATACCCTGGTGTGGAGGAGCGACAAAGATTTCTGAA 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 996 ACCTCACATCATGGATTATAGTAAATACCCTGGTGTGGAGGAGCGACAAAGATTTCTGAA 1055
Query 841 AACATATTTGAGTTATTCAGGTGAAGAGCCCAGCGATACTATGGTCGAAAAACTCCTAGA 900
||||||| |||||||||||| |||| |||||||||||||||||||| |||||||||||||
Sbjct 1056 AACATATATGAGTTATTCAGATGAAAAGCCCAGCGATACTATGGTCAAAAAACTCCTAGA 1115
Query 901 AGACGTTGAGAAATATACACTTGCTAGTCATCTAACTTGGGGTTTATGGGGAATTATATC 960
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1116 AGACGTTGAGAAATATACACTTGCTAGTCATCTAATTTGGGGTTTATGGGGAATTATATC 1175
Query 961 GGAACATGTGAATGAAATCGACTTCGACTACATGGAGTACGCAAGACAAAGGTTTGAGCA 1020
|||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||
Sbjct 1176 GGAACATGTGAATGAAATCGACTTTGACTACATGGAGTATGCAAGACAAAGGTTCGAGCA 1235
Query 1021 GTATTGGTTAACAAAGCCGAGGCTCCTTG-AGGCTTCCGAACACAAGTAA-TTTCTATGG 1078
||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||
Sbjct 1236 GTATTGGTTAACAAAGCCGAGGCTCCTTGCAG-CTTCCGAACACAAGTAAATTTCTATGG 1294
Query 1079 ACACAATCCAAG 1090
|| ||| |||||
Sbjct 1295 ACCCAACCCAAG 1306
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53413379880
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5