BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926827
Length=1143
Score E
Sequences producing significant alignments: (Bits) Value
AT1G74460.1 | Symbols: | GDSL-like Lipase/Acylhydrolase superf... 1823 0.0
> AT1G74460.1 | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily
protein | chr1:27987961-27989801 REVERSE LENGTH=1326
Length=1326
Score = 1823 bits (987), Expect = 0.0
Identities = 1091/1142 (96%), Gaps = 3/1142 (0%)
Strand=Plus/Plus
Query 1 CACGCATTCATATTTGGCGACATGAAGTTCTGCGCGATATTCATATTGTTTATCATTCTT 60
||| |||||| ||||||||||||||||||||||||||||||| | || || ||| |||||
Sbjct 16 CACACATTCAAATTTGGCGACATGAAGTTCTGCGCGATATTCGTGTTATTCATCGTTCTT 75
Query 61 GCAATCAACGGCTACGATTGCAAGATAGTCCAGTTTATATTTGGAGATTCATTGTCTGAT 120
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 76 GCAATCAACGGCTACGATTGCAAGATAGTCCAATTTATATTTGGAGATTCATTGTCTGAT 135
Query 121 GTAGGTAACAATAAGAATCTACCGAGGAGTTTAGCGACGGCGAATCTGCCCTTTTACGGT 180
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 136 GTAGGCAACAATAAGAATCTACCTAGGAGTTTAGCGACGGCGAATCTGCCCTTTTACGGT 195
Query 181 ATTGATTTTGGCAATGGTTTGCCTAATGGAAGGTTCACTAACGGCCGCACTGTTTCAGAC 240
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 196 ATTGATTTTGGCAATGGTTTGCCTAATGGAAGGTTCACTAATGGCCGCACTGTTTCAGAC 255
Query 241 ATTATAGGTGATGAAATTGGATTGCCAAGACCAGTAGCCTTTTTGGATCCAACAATGAAT 300
|||||||||||| |||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 256 ATTATAGGTGATAAAATTGGATTGCCAAGACCAGTAGCCTTCTTGGATCCATCAATGAAT 315
Query 301 GAAGATGTAATACTTGAAAATGGAGTGAACTATGCTTCAGGAGGTGGTGGAATCTTGAAT 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 316 GAAGATGTAATACTTGAAAATGGAGTGAACTATGCTTCAGGAGGTGGTGGAATCTTGAAC 375
Query 361 GAAACTGGCGGTTATTTCATCCAAAGATTTTCGCTATGGAAGCAAATAGAATTATTCCAA 420
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 376 GAAACTGGTGGTTATTTCATCCAAAGATTTTCGCTGTGGAAGCAAATAGAATTATTCCAA 435
Query 421 GGGACACAAGATGTAGTTGTGGCAAAGATAGGGAAAAAAGAAGCAGACAAGTTCTTCCAA 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 436 GGGACACAAGATGTAGTTGTGGCAAAGATAGGGAAAAAAGAAGCAGACAAGTTCTTTCAA 495
Query 481 GATGCTCGATACGTCGTCGCTTTAGGCAGCAATGACTTCATTAACAACTACTTGATGCCT 540
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 496 GATGCTCGATACGTCGTCGCTTTAGGCAGCAATGACTTCATTAACAACTATTTGATGCCT 555
Query 541 GTCTATAGCGACTCTTGGAAATACAATGATCAAACCTTCGTCGACTACTTAATGGAAACT 600
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 556 GTCTATAGCGACTCTTGGAAATACAATGATCAAACCTTCGTCGACTACTTAATGGAAACA 615
Query 601 CTTGAATCTCAACTCAAGATGTTGCATAGTTTAGGAGCGAGGAAGCTAATGGTGTTTGGG 660
|||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 616 CTTGAATCTCAACTCAAGGTGTTACATAGTTTAGGAGCGAGGAAGCTAATGGTGTTTGGT 675
Query 661 TTAGGACCAATGGGTTGTATCCCACTCCAAAGAGCTCTAAGCCTGGATGGAAATTGTCAA 720
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 676 TTAGGACCAATGGGTTGTATCCCACTGCAAAGAGCTCTAAGCCTGGATGGAAATTGTCAA 735
Query 721 AACAAAGCGAGTAATCTTGCTAAGAAATTCAACAAAGCTGCCACCACAATGCTCCTAGAT 780
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 736 AACAAAGCGAGTAATCTTGCTAAGAGATTCAACAAAGCTGCCACCACAATGCTCCTAGAT 795
Query 781 CTCGAGGCCAAGCTCCCTAACGCAAGCTACAGGTTTGGTGAAGCCTATGACCTCGTCAAC 840
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 796 CTCGAGACCAAGCTCCCTAACGCAAGCTACAGGTTTGGTGAAGCCTATGACCTCGTCAAC 855
Query 841 GACATCATCACTAACCCTAAGAAATACGGGTTTGACAACTCGGATTCGCCGTGTTGCTCG 900
||| ||||||||||||| || |||||||||||||| ||||||||||||||||||||||||
Sbjct 856 GACGTCATCACTAACCCAAAAAAATACGGGTTTGATAACTCGGATTCGCCGTGTTGCTCG 915
Query 901 TTCTACAGAATCCGGCCGGCGCTGACATGTATTCCGGCGTCGACATTGTGTAAAGACAGA 960
||||||||||||||||| ||||| || |||||||| ||||||||||||||||||||||||
Sbjct 916 TTCTACAGAATCCGGCCTGCGCTAACGTGTATTCCAGCGTCGACATTGTGTAAAGACAGA 975
Query 961 AGTAAGTATGTGTTTTGGGACGAGTATCATCCCACCGATAAGGCTAACGAGCTAGTTGCT 1020
|||||||||||||||||||| ||||||||||||||||||||||||||||| || || |||
Sbjct 976 AGTAAGTATGTGTTTTGGGATGAGTATCATCCCACCGATAAGGCTAACGAACTCGTCGCT 1035
Query 1021 AATATACTCATCAAAAGGTTTGACTTCATGCGTTCTGATGACGGTACCTCCCATGCTCCT 1080
||||||||||||||||| ||||||||||||||| | |||||||||| ||||||||||||
Sbjct 1036 AATATACTCATCAAAAGATTTGACTTCATGCGTGCCGATGACGGTATCTCCCATGCTCCA 1095
Query 1081 TCTCCGGCGCCGGCTATTTCTCCTTCTCCCGACACTAACTGATTG-AATTA-ATGTCTTA 1138
||||| ||||||| ||||||||||||| |||||| |||||||| | ||||| | ||||||
Sbjct 1096 TCTCCCGCGCCGGATATTTCTCCTTCTTCCGACAATAACTGATCGGAATTACA-GTCTTA 1154
Query 1139 AT 1140
||
Sbjct 1155 AT 1156
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56074008765
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5