BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg926846

Length=349
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G74670.1 | Symbols:  | Gibberellin-regulated family protein ...   521    1e-147


> AT1G74670.1 | Symbols:  | Gibberellin-regulated family protein 
| chr1:28053286-28054149 FORWARD LENGTH=654
Length=654

 Score =  521 bits (282),  Expect = 1e-147
 Identities = 328/350 (94%), Gaps = 4/350 (1%)
 Strand=Plus/Plus

Query  1    TCTCTCTCCCTCAAAAGCCAGTCATGGCCAAATTCATAACTT-TTCTTCTCTTGGC-CAC  58
            |||||||| ||||| ||| ||||||||||||| ||||||||| || |||||||  | |||
Sbjct  70   TCTCTCTCTCTCAAGAGCTAGTCATGGCCAAACTCATAACTTCTT-TTCTCTT-ACTCAC  127

Query  59   AATTTTCTTCTCTTTCATTTGTCTCACTATGTCAAAAGAAGCTGAGTACCAGCCAGAAAG  118
            |||||| ||| ||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct  128  AATTTTATTCACTTTCGTTTGTCTCACTATGTCAAAAGAAGCTGAGTACCATCCAGAAAG  187

Query  119  TTATGGACCCGGAAGTCTGAAATCATACCAATGTGGAGGACAATGCACGAGGAGGTGTGG  178
            ||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||| |
Sbjct  188  TTATGGACCAGGAAGTCTGAAATCATACCAATGTGGAGGACAATGCACAAGGAGATGTAG  247

Query  179  TAACACAAAGTATCATAAGCCATGCATGTTCTTCTGCCAAAAGTGTTGTGCTAAATGCCT  238
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  248  CAACACAAAGTATCATAAGCCATGCATGTTCTTCTGCCAAAAGTGTTGTGCTAAATGCCT  307

Query  239  TTGTGTCCCTCCAGGCACGTACGGCAATAAACAAGTGTGTCCTTGTTACAACAACTGGAA  298
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  308  TTGTGTCCCTCCAGGCACGTACGGCAACAAACAAGTGTGTCCTTGTTACAACAACTGGAA  367

Query  299  GACTCAACAAGGTGGACCAAAATGTCCATAAGCAAAAACATTAAAAGAGA  348
            ||||||||||||||||||||||||||||||| |||||||||| | |||||
Sbjct  368  GACTCAACAAGGTGGACCAAAATGTCCATAAACAAAAACATTGAGAGAGA  417



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16337018425


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5