BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926860
Length=727
Score E
Sequences producing significant alignments: (Bits) Value
AT1G74820.1 | Symbols: | RmlC-like cupins superfamily protein ... 1081 0.0
> AT1G74820.1 | Symbols: | RmlC-like cupins superfamily protein
| chr1:28111882-28112565 REVERSE LENGTH=684
Length=684
Score = 1081 bits (585), Expect = 0.0
Identities = 654/687 (95%), Gaps = 6/687 (1%)
Strand=Plus/Plus
Query 24 ATGGCTCATATTTCACAAATCTCTTCTTTTCTCTCAAGAGTTTTAATCTTCCTTGCATTA 83
||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 1 ATGGCTCATATTTCACAAATCTCTTCTTTTCTCTCAATAGTTTTAATCTTCCTCGCATTA 60
Query 84 TGCATCACTCTCTTCACGAACCCTACTCTCGCACTCCCAGCCCTAAAACTTAACCCTTTA 143
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 61 TGCATCACTCTCTTCACGAACCCTACTCTCTCACTCCCAGCCCTAAAACTTAACCCTTTC 120
Query 144 CAAGAATTTTGTGTAGCTGATCTCCAAGCTACACCAACCAACAGTGGCTT-CCCCTGCAA 202
||||| |||||||||||||||||||||||||| ||||| |||||||| || ||| |||||
Sbjct 121 CAAGACTTTTGTGTAGCTGATCTCCAAGCTACCCCAACTAACAGTGG-TTACCCTTGCAA 179
Query 203 GTCACAAGTCACCTCTGAAGACtttttttATTCCGGCTTGAACACTCCTTTAAACACGTC 262
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 180 GTCACAAGTCACCTCTGAAGACTTCTTTTATTCCGGCTTGAACACTCCTTTAAACACCTC 239
Query 263 GAACCCAAAAGGTATTGCCGCTAATCCAGCCAATCTCTTGACCTTCCCGGGCCTAAACAC 322
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 240 GAACCCAAAAGGTATTGCCGCTAATCCAGCCAATCTCTTGACCTTTCCAGGCCTAAACAC 299
Query 323 TTTGGGAATATCCATGTACAACGTTGCAATTGCACCTGGAGGATACAACCAACCTCACTC 382
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TTTGGGAATATCCATGTATAACGTTGCAATTGCACCTGGAGGATACAACCAACCTCACTC 359
Query 383 TCACCCCGGTGCGACCGAGGCAGGGGTCGTGATCGAAGGTTGGGTCTTGGTTGGGTTCTT 442
||||||||||| |||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 360 TCACCCCGGTGTAACCGAGGCAGGGGTCGTGATCGAAGGCTCGGTCTTGGTTGGGTTCTT 419
Query 443 GACGACTAACAACACGTTGTACTCGAAGGTTATTGGACCTGGTGATATGTTTGTGATTCC 502
||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 420 AACGACTAACTACACGTTGTACTCGAAGGTTATTGGACCCGGTGATATGTTTGTGATTCC 479
Query 503 TCCGGGACTCATTCATTACGAGGGGAACGTTGGGAAAACGCAATGCCGTCTTTTGACGGT 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TCCGGGACTCATTCATTACGAGGGGAACGTTGGGAAAACGCAATGCCGTCTTTTGACGGT 539
Query 563 TGTTGCTGACGACTTGCCTAGCGAGGTTGGTGTGCCTCACACTCTGTTTGCTACGAAACC 622
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 540 GGTTGCTGACGACTTGCCTAGCGAGGTTGGTGTGCCTCACACTCTGTTGGCTACGAAACC 599
Query 623 CGCGATTCCAGAA-GCAG-TATTGATGGCGGCGTTCAAGGCGGATAGTAAAACAATCGAC 680
|||||||||| || | || ||||||| ||||||| ||||||||||||||||||||| ||
Sbjct 600 CGCGATTCCA-AACG-AGGTATTGATATCGGCGTTTAAGGCGGATAGTAAAACAATCAAC 657
Query 681 ATGCTCAGGTCAAAGTTTACTACTTAA 707
||||||||||||||||||||| |||||
Sbjct 658 ATGCTCAGGTCAAAGTTTACTGCTTAA 684
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35264371194
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5