BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926871
Length=1461
Score E
Sequences producing significant alignments: (Bits) Value
AT1G74910.1 | Symbols: | ADP-glucose pyrophosphorylase family ... 2444 0.0
AT1G74900.1 | Symbols: OTP43 | Pentatricopeptide repeat (PPR) s... 150 3e-35
> AT1G74910.1 | Symbols: | ADP-glucose pyrophosphorylase family
protein | chr1:28135361-28138768 REVERSE LENGTH=1969
Length=1969
Score = 2444 bits (1323), Expect = 0.0
Identities = 1418/1464 (97%), Gaps = 5/1464 (0%)
Strand=Plus/Plus
Query 2 AAAA-ATCTGAGCTTTGAAAATGGGGAGCTCAATGGAGGAGAAAGTGGTGGCTGTGATCA 60
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 293 AAAAGATCTGAGCTTTGAACATGGGGAGCTCAATGGAGGAGAAAGTGGTGGCTGTGATCA 352
Query 61 TGGTCGGTGGTCCAACCAAAGGTACTCGGTTTCGGCCATTGTCGCTGAATATTCCAAAGC 120
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 353 TGGTCGGTGGTCCAACCAAAGGCACTCGATTTCGGCCATTGTCGCTGAATATTCCAAAGC 412
Query 121 CTCTGTTTCCTATTGCGGGACAGCCAATGGTGCATCATCCTATTTCAGCTTGTAAAAGAA 180
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 413 CTCTGTTTCCTATTGCGGGACAACCAATGGTGCATCATCCAATTTCAGCTTGTAAAAGAA 472
Query 181 TTCCAAATTTAGCACAAATATATCTTGTTGGCTTCTATGAGGAAAGGGAATTTGCACTTT 240
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 473 TTCCAAATTTAGCTCAAATATATCTTGTTGGCTTCTATGAGGAAAGGGAATTTGCACTTT 532
Query 241 ATGTCTCAGCCATCTCTAATGAACTCAAAGTTCCTGTTAGATATCTGCGAGAAGACAAAC 300
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 533 ATGTTTCAGCCATCTCTAATGAACTTAAAGTTCCTGTTAGATATCTGCGAGAAGACAAAC 592
Query 301 CACATGGTTCAGCTGGTGGGCTCTATCACTTTAGAAATCTTATTATGGAAGATAGCCCGT 360
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 593 CACATGGTTCAGCTGGTGGGCTGTATCACTTTAGAAATCTTATTATGGAAGATAGTCCGT 652
Query 361 CTCATATCTTCCTGCTTAACTGTGATGTTTGCTGCAGTTTCCCTTTGCCCGAAATGCTCG 420
||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 653 CTCATATCTTCCTGCTTAACTGTGATGTTTGCTGCAGTTTCCCCTTGCCCAAAATGCTCG 712
Query 421 AGGCTCACAGGGGATATGGTGGAATTGGAACTCTTCTTGTGATCAAGGTCTCTCCTGAAT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 713 AGGCTCACAGGGGATATGGTGGAATTGGAACTCTTCTTGTGATCAAGGTCTCTCCTGAAT 772
Query 481 CAGCCAGCCAATTTGGAGAATTGGTAGCAGATCCAGTTACTAATGAGCTGCTTCATTACA 540
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 773 CAGCCAGCCAATTTGGAGAATTGGTTGCAGATCCAGTTACTAATGAGCTGCTTCATTACA 832
Query 541 CCGAGAAACCCGAAACTTTTGTCAGTGATCGTATTAACTGTGGTGTTTATGTATTTACAC 600
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 833 CCGAGAAACCCGAAACTTTTGTCAGTGATCGAATTAACTGTGGTGTTTATGTATTTACAC 892
Query 601 CTGAAATTTTTAATGCCATAGGAGATGTTTCTACTCAGAGGAAAGATAGAGCAACTCTAA 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 893 CTGAAATTTTTAATGCCATAGGAGATGTTTCTACTCAGAGGAAAGATAGAGCAACTCTAA 952
Query 661 AACGTGTTTCCAGCTTCGAAGCTCTTCAACCGGCAACAAGGATCCCGACAGATTTTGTAA 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 953 AACGTGTTTCCAGCTTCGAAGCTCTTCAACCGGCAACAAGGATCCCGACAGATTTTGTAA 1012
Query 721 GACTGGATCAAGACATCCTTTCACCTCTAGCTGGGAAGAAACAGCTATATACTTATGAGA 780
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1013 GACTGGATCAAGACATCCTTTCACCTCTAGCTGGGAAGAAACGGCTATATACTTATGAGA 1072
Query 781 CTATGGATTTCTGGGAGCAAATCAAATCTCCTGGAATGTCTTTGAGGTGTTCGGGACTCT 840
|||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||
Sbjct 1073 CTATGGATTTCTGGGAGCAAATCAAATCTCCTGGGATGTCGTTGAGGTGTTCAGGACTCT 1132
Query 841 ATCTTTCCCAATTCCGCTTGACCTCTCCCCAACTGTTGGCTAGTGGTGATGGAACAAGGA 900
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1133 ATCTTTCCCAATTCCGCTTGACATCTCCCCAACTGTTGGCTAGTGGTGATGGAACAAGGA 1192
Query 901 GTGCCATTGTGATTGGTGATGTTTACATACATCCTTCTGCAAAAGTACACCCAACTGCAA 960
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1193 GTGCCATTGTGATTGGTGATGTTTACATACATCCTTCTGCAAAAGTTCACCCAACTGCAA 1252
Query 961 AGATTGGTCCCAACGTCTCAATCTCTGCAAATGCTCGTGTTGGACCGGGCGTCAGGCTTA 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1253 AGATTGGTCCCAACGTCTCAATCTCTGCAAATGCTCGTGTTGGACCGGGCGTCAGGCTTA 1312
Query 1021 TCAGCTGTATCATCCTTGATGACGTTGAGATCATGGAAAATGCAGTGGTGACTAACGCAA 1080
| ||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 1313 TGAGCTGCATCATCCTTGACGATGTTGAGATCATGGAAAATGCAGTGGTGACTAACGCAA 1372
Query 1081 TTGTTGGGTGGAAATCTTCTATCGGGAGATGGTCCCGTGTCCAGGCTGAGGGAGTTTACA 1140
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 1373 TTGTTGGGTGGAAATCTTCTATCGGGAGATGGTCCCGCGTCCAGGCTGAGGGAGTCTACA 1432
Query 1141 ATTCCAAACTCGGAGTTACAATTCTCGGAGACTCGGTTGCAGTTGAAGATGAGGTTGTGG 1200
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1433 ATTCGAAACTCGGAGTTACAATTCTCGGAGACTCGGTTGCAGTTGAAGACGAGGTTGTGG 1492
Query 1201 TGACCAGCTGTATTGTTCTTCCAAACAAGACACTGAACGTCAGTGTTCAAGACGAGATCA 1260
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1493 TGACCAGCAGTATTGTTCTTCCAAACAAGACACTGAACGTCAGTGTTCAAGACGAGATCA 1552
Query 1261 TTTTGTAATTGAAAAATGGAACATGAAAAATGGAACCAACCCAGTGGGGAGC--C-ACAC 1317
|||||||| ||||||| |||| ||||||||||||||||||||||||||||| | ||||
Sbjct 1553 TTTTGTAACTGAAAAACGGAAGTTGAAAAATGGAACCAACCCAGTGGGGAGCAGCCACAC 1612
Query 1318 CATCTCTCTCTGATTCAATATCTACTGGAGAATCACAGAAGCATATATTTGGGAACTAAT 1377
||||| ||||||||||||||||||||||||| |||| ||||| ||||||||||||||||
Sbjct 1613 TATCTCCCTCTGATTCAATATCTACTGGAGAACCACATAAGCAAATATTTGGGAACTAAT 1672
Query 1378 TCACATGTATCATTTATTTACACCAAGAATTTTCCAACTTTGTATCAATTTCATCTTCTA 1437
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||
Sbjct 1673 TCACATGTATCATTTATTTACACCAAGAATTTTCCAACATTGTATCAATTCCATTTTCTA 1732
Query 1438 TACTCACAATCACAGCTACTGTAA 1461
||||||||| ||||||||||||||
Sbjct 1733 TACTCACAA-CACAGCTACTGTAA 1755
> AT1G74900.1 | Symbols: OTP43 | Pentatricopeptide repeat (PPR)
superfamily protein | chr1:28133933-28135667 FORWARD LENGTH=1648
Length=1648
Score = 150 bits (81), Expect = 3e-35
Identities = 90/94 (96%), Gaps = 1/94 (1%)
Strand=Plus/Minus
Query 1368 GGGAACTAATTCACATGTATCATTTATTTACACCAAGAATTTTCCAACTTTGTATCAATT 1427
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1648 GGGAACTAATTCACATGTATCATTTATTTACACCAAGAATTTTCCAACATTGTATCAATT 1589
Query 1428 TCATCTTCTATACTCACAATCACAGCTACTGTAA 1461
||| |||||||||||||| ||||||||||||||
Sbjct 1588 CCATTTTCTATACTCACAA-CACAGCTACTGTAA 1556
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72037782075
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5