BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926881
Length=2261
Score E
Sequences producing significant alignments: (Bits) Value
AT1G75010.1 | Symbols: ARC3 | GTP binding | chr1:28164840-28170... 3539 0.0
> AT1G75010.1 | Symbols: ARC3 | GTP binding | chr1:28164840-28170054
REVERSE LENGTH=2493
Length=2493
Score = 3539 bits (1916), Expect = 0.0
Identities = 2151/2266 (95%), Gaps = 10/2266 (0%)
Strand=Plus/Plus
Query 4 TTCCGTAGGAGAAGAGCAATGCTGATTTCTATGGAGCTTCCAGTTTTCTCCACTCTCCGA 63
|||||||| || ||||||||| |||||||||||| |||||||||||||| |||||||||
Sbjct 96 TTCCGTAGAAGCGGAGCAATGCCGATTTCTATGGAACTTCCAGTTTTCTCTACTCTCCGA 155
Query 64 GTACCATTGCTCTCTCGTTTAGCTCTAGTTCCTACTTTTGGAATTCCGTTTTCGTCCCTT 123
||||||||| |||||||||||||| || |||||||||||||| |||||||||||||||||
Sbjct 156 GTACCATTGTTCTCTCGTTTAGCTTTACTTCCTACTTTTGGAGTTCCGTTTTCGTCCCTT 215
Query 124 GGTGCTTCGGCGCGATTGAATTATACCGCTCGAAAGGCGCGTCGGATTTGCGTGATGTGT 183
|||||| || |||||||||| | ||| |||||||||||||||||||||||||||||||
Sbjct 216 GGTGCTACGACGCGATTGAACTGTACATCTCGAAAGGCGCGTCGGATTTGCGTGATGTGC 275
Query 184 TTGGTGAGGGATTCGGCTCCCATGGAGACGTGCGAGAGAGCTGGAGAAGATGGGTCT--- 240
|| ||||||||||| ||||| || |||||||||||||||||||||||||||||||||
Sbjct 276 TTAGTGAGGGATTCTGCTCCGATAGAGACGTGCGAGAGAGCTGGAGAAGATGGGTCTGAC 335
Query 241 GAGTTCATTGAGG-TCGTTGTTATCGGTAGTCGCAAGGAGTCTATCATGGATTCTTGCTT 299
||||||||||||| || |||| |||||||||||||||||||||||||||||||| |||||
Sbjct 336 GAGTTCATTGAGGTTC-TTGTCATCGGTAGTCGCAAGGAGTCTATCATGGATTCATGCTT 394
Query 300 GGATTCTCCTTTCCCTTCTCTTCCTCTCCGATTTTGGAGTATTAGCAAGGACAGCTCTGG 359
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 395 GGATTCTCCTTTTCCTTCTCTTCCTCTGCGATTTTGGAGTATTAGCAAGGACAGCTCTGG 454
Query 360 AGATTTAGTGTTACAGCAGAGGCTCAAACACCAAGATAAT-ACTTCAAAGACCATGAATC 418
|| |||||||||||||||||||||||| |||||||||||| ||| |||||||||||||
Sbjct 455 AGGTTTAGTGTTACAGCAGAGGCTCAATCACCAAGATAATGCCTT-GAAGACCATGAATC 513
Query 419 CAATTGAGCTGATACAATCACGTCCAAGGGCCTTCATCCTTGTGGCTAGTGCTGGATATG 478
||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 514 CAATTGAGCTGTTACAGTCACGTCCAAGGGCCTTCATCCTTGTGGCTAGTGCTGGATATG 573
Query 479 GCTCTGACCAGGCTGAAGCTATTAATATTCTTAGTGCAGTAAGAACTGGGGGTAACTTAG 538
| |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 574 GTTCTGACCAGGTTGAAGCTATTAATATTCTTAGTGCAGTAAGATCTGGGGGTAACTTAG 633
Query 539 CTGTTGCTGTGCTATTAAAACCTTTCAGCTTTGAAGGCCGAAAGCGTCTAGAAGAGGTTA 598
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 634 CTGTTGCTGTGCTATTAAAGCCTTTCAGCTTTGAAGGCCGAAAGCGTCTAGAAGAGGTTA 693
Query 599 ACGAATTGGCTAGAAAACTGCAGCAACACACCAATTTCTGTATAGATATCGACATAGAGG 658
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 694 ACGAGTTGGCTAGAAAACTGCAGCAACACACCAATTTCTGTATAGATATCGACATAGAGG 753
Query 659 TTTTACTACAGAAGGATTTGGTAACTTTGGACGAGGCGCTGAGAAATGCAAACAATGCTG 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 754 TTTTACTACAGAAGGATTTGGTAACTTTGGACGAGGCGCTGAGAAATGCAAACAATGCTG 813
Query 719 TTTCCATGGCAGTGAATGCAGCTTCCGCTCTGATAAGTGAGATGCATGTAAACTTCATCG 778
| || |||||| | ||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 814 TGTCTATGGCAATAAATGCAGCTTCCGCTCTGATAAGTGGGATGCATGGAAACTTCATCG 873
Query 779 ATGTGATGCATAAAGATCTCAAAGAACTTGAAGGTTCAGAAGTTAAAACGATTCTAGAAA 838
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 874 ATGTGATGCATAAAGATCTTAAAGAACTTGAAGGTTCAGAAGTTAAAACGATTCTAGAAA 933
Query 839 GCTACAAAGAGGCAAAGGTTGGTTTTGGAGTTGGTCACAACCTTAAGACTTCGATTTTAC 898
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 934 GTTACAAAGAGGCAAAGGTTGGTTTTGGAGTTGGTCACAACCTTAAGACTTCGATATTAC 993
Query 899 GAGCTATATATGACTGCCCATTCTTTCGCCCTGGTCTAAAGGATCTAAACGCTATTATAT 958
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 994 GAGCTATATATGACTGCCCATTCTTTCGACCTGGTCTAAAGGATCTAAACGCTATTATAT 1053
Query 959 GCATTGTGGCTAGTTCGGCACCTCTTCAGAAGAAGGACGTGAAAACAATTCTTCGTACTT 1018
|||||||||||||||||| |||||| |||||||| |||||||||||||||||||||||||
Sbjct 1054 GCATTGTGGCTAGTTCGGTACCTCTCCAGAAGAAAGACGTGAAAACAATTCTTCGTACTT 1113
Query 1019 TACGTCAAACAATGGAGTATAGTGGAGATATTATAGTATCTACTGTTCATGAACCTGATC 1078
| |||||||| |||||||| | |||||||||||||||||||||||||||||| |||||||
Sbjct 1114 TCCGTCAAACTATGGAGTACACTGGAGATATTATAGTATCTACTGTTCATGAGCCTGATC 1173
Query 1079 TGGAGCCTAAAGTGCGTGTCACAACGTTTTTTATTCTAAGTTCTTCAGAAGAGGAAACAT 1138
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1174 TGGAGCCTAAAGTGCGTGTCACAACGTTTTTTATTCTAAGTTCTTCAGAAGTGGAAACAT 1233
Query 1139 CCAACAAAGGCAACATTTTTTCTGGTCTTGTTCCTTTTGTTTTAAATATCTTCACGAGAT 1198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1234 CCAACAAAGGCAACATTTTTTCTGGTCTTGTTCCTTTTGTTTTAAATATCTTCACGAGAT 1293
Query 1199 ATCGTTCACAGCTCCAAAAAGAAACAAATAGTGGAATTGGAGAGACGCCAGTTTCAATTA 1258
|||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 1294 ATCGTTCACAGCTCCAAAAAGAAACAAATATTGGACTTGGAGAGACGCCAGTTTCAATTA 1353
Query 1259 AAGGTTCAGCAGACTCTATTGACGTAAAAAGTTCGAATCAGAATGTTGAAGAATTTGAAA 1318
||| |||||||||||||| ||||||||||| ||| ||||||||| |||| ||||||||||
Sbjct 1354 AAGATTCAGCAGACTCTACTGACGTAAAAACTTCCAATCAGAATATTGAGGAATTTGAAA 1413
Query 1319 TTGACTCTGAGGACCTCCTGGAAATTTCTGAGAAC-G-G-TGATAGTGAATACTCATCAA 1375
||||||||||||||||||||||| ||||||||||| | | ||||||||||||| ||| ||
Sbjct 1414 TTGACTCTGAGGACCTCCTGGAAGTTTCTGAGAACGGTGATGATAGTGAATACCCATTAA 1473
Query 1376 AAGAGGGGGAACCATCCAGAAACAGTCGACTGGTTCTTGAAGATGAAAATATAGAAGATT 1435
|||||||||||||||||||||||||||| |||| |||| ||||||||||| |||||||||
Sbjct 1474 AAGAGGGGGAACCATCCAGAAACAGTCGTCTGGATCTTAAAGATGAAAATGTAGAAGATT 1533
Query 1436 TTGGTGCTATCCAGAGGGAGCCAATTGCCAATTGGAGTGTGGATCCGGGATATCAGATTG 1495
|||||||||||||||||||||| ||||||||||||||| |||||| ||||||||||||||
Sbjct 1534 TTGGTGCTATCCAGAGGGAGCCTATTGCCAATTGGAGTATGGATCAGGGATATCAGATTG 1593
Query 1496 AGCAGAAATGGCAAGCTGATTCTGGAGACTCAGCAGTGCTTAGCCTGGGCATTGTCAACC 1555
||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||
Sbjct 1594 AGCAGAAATGGCAAGCTGATTCTGGAGACACTGCAGTGCTTAGCCTGGGAATTGTCAACC 1653
Query 1556 TTCCTGTTGGTGTGAGACCTTCAAAGAAGTTGAACAGTACTCTTGGTGTTGCCAGTCAAC 1615
|||||||||||||||||||||| ||||| |||||||||| ||| |||||||||||||||
Sbjct 1654 TTCCTGTTGGTGTGAGACCTTCGAAGAAATTGAACAGTAATCTCAGTGTTGCCAGTCAAC 1713
Query 1616 CCTTTCGAAAGGCTGATTCCAGAGAAGAATCATTTGTCAACCCTAATGGGTCGACAAAAG 1675
|| | | ||||||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 1714 TCTCTAGGAAGGCTGATTCCAGAGAAGAATCATTTTTCAACCCTAATGGCTCGACAAAAG 1773
Query 1676 ACTCTAGTGATAATGCATCTACTCTGCTATCTGAGAAATATGCTGATTTTACAAAGCAAA 1735
|||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1774 ACTCTAGTGATACTGCATCTACCCTGCTATCTGAGAAATATGCTGATTTTACAAAGCAAA 1833
Query 1736 GAAATCTATCCGCTCGAGCAGCGTCTATGCTGGAAGCTGAACGAGATTCATCAAAGAGAT 1795
|||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 1834 GAAATCTATCCGCTCGAGCATCGTCTATGCTGGAAGCTGAACGAGATTCATCAAAAAGAT 1893
Query 1796 GGAGCCCTATTCTCGAGATGCAGTACAGAGGAGGACTTTTCAAGGGAAGATGCCAAGGAG 1855
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1894 GGAGTCCTATTCTTGAGATGCAGTACAGAGGAGGACTTTTCAAGGGAAGATGCCAAGGAG 1953
Query 1856 GCCTTCCCGAAGGAAAGGGTCGTTTGGTACTTGGAGATGGAAGCATATATGATGGAATGT 1915
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1954 GCCTTCCCGAAGGAAAGGGTCGTTTGGTACTTGGAGATGGAAGCATATATGATGGAATGT 2013
Query 1916 GGCACAACGGCAAAAGATCTGGTCTTGGAACATTCTACTTCAAGAATGGAGACGTGTTCC 1975
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2014 GGCACAACGGTAAAAGATCTGGTCTCGGAACATTCTACTTCAAGAATGGAGACGTGTTCC 2073
Query 1976 AAGGCACATGGAGAGAAGATTTAATACACGGAAAGGGTTGGTTTTATTTCCACAAAGGTG 2035
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2074 AAGGCACATGGAGAGAAGATTTAATACACGGAAAGGGTTGGTTTTATTTCCACAAAGGTG 2133
Query 2036 ATCGATGGTTTGCAAATTTCTGGAAAGGAAAAGCCAGTGGCGAAGGCCGGTTCTATTCAA 2095
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2134 ATCGATGGTTTGCAAATTTCTGGAAAGGAAAAGCCAGTGGCGAAGGCCGGTTCTATTCAA 2193
Query 2096 AGTCCGGTGAGATATTCTTTGGACATTTCAAAGATGGATGGCGACACGGACAATTCCTCT 2155
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 2194 AGTCCGGTGAGATATTCTTTGGACATTTCAAAGATGGTTGGCGCCACGGACAATTCCTCT 2253
Query 2156 GTATAGATGTGGATGGAACAAGATACTCCGAAACTTGGGATGACGGTGTTCTTATTGACC 2215
|||||||| ||||||||||||||||||| ||||||||||| ||||||||||| |||||||
Sbjct 2254 GTATAGATTTGGATGGAACAAGATACTCTGAAACTTGGGACGACGGTGTTCTCATTGACC 2313
Query 2216 GGAAACAAATGGACGGCGGAGATTGATATCGTCCGGCAATGTTGTA 2261
|||||||| |||||| |||||||||||||| |||||||||| ||||
Sbjct 2314 GGAAACAAGTGGACGCCGGAGATTGATATCATCCGGCAATGCTGTA 2359
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 112198218075
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5