BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926884
Length=761
Score E
Sequences producing significant alignments: (Bits) Value
AT1G75040.1 | Symbols: PR5, PR-5 | pathogenesis-related gene 5 ... 1090 0.0
> AT1G75040.1 | Symbols: PR5, PR-5 | pathogenesis-related gene
5 | chr1:28177703-28178940 FORWARD LENGTH=980
Length=980
Score = 1090 bits (590), Expect = 0.0
Identities = 685/731 (94%), Gaps = 5/731 (1%)
Strand=Plus/Plus
Query 33 TCCAGTATTCACATTCTCTTCTTCGTGTTCATCAC-AGCCGGCATTGCTGTTTCT-GCCA 90
||||||||||||||||||||| ||||||||||||| || ||||||||||| || | ||||
Sbjct 64 TCCAGTATTCACATTCTCTTCCTCGTGTTCATCACAAG-CGGCATTGCTG-TTATGGCCA 121
Query 91 CCGACTTCACACTAAAGAACAATTGCCCTAACACCGTCTGGGCCGGAACTCTCGCCGGCC 150
| |||||||| |||| |||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 122 CAGACTTCACTCTAAGGAACAATTGCCCTACCACCGTCTGGGCCGGAACTCTCGCCGGTC 181
Query 151 AAGGACCCAAGCTCGGTGACGGCGGATTTGAATTGACTCCAGGTGCTTCCCGACAGCTCA 210
|||||||||||||||| || || |||||||||||||||||||||||||||||||||||||
Sbjct 182 AAGGACCCAAGCTCGGCGATGGAGGATTTGAATTGACTCCAGGTGCTTCCCGACAGCTCA 241
Query 211 CGGCTCCTGCCGGATGGTCAGGCCGGTTCTGGGCTCGTACAGGCTGCAACTTTGACGCCT 270
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 242 CGGCTCCTGCAGGATGGTCAGGCCGGTTCTGGGCTCGTACAGGCTGCAACTTTGACGCCT 301
Query 271 CCGGCAACGGTAGATGCGTTACCGGAGACTGTGGCGGTCTAAGATGTAACGGTGGCGGAG 330
|||| ||||||||||| || |||||||||||||||||||||||||||||||| |||||||
Sbjct 302 CCGGAAACGGTAGATGTGTAACCGGAGACTGTGGCGGTCTAAGATGTAACGGCGGCGGAG 361
Query 331 TTCCTCCAGTCACTCTTGCTGAATTCACCCTCGTAGGCGATGGCGGCAAAGATTTCTACG 390
||||||| |||||||| ||||||||||| || ||||||||||||||||||||||||||||
Sbjct 362 TTCCTCCCGTCACTCTGGCTGAATTCACTCTAGTAGGCGATGGCGGCAAAGATTTCTACG 421
Query 391 ACGTGAGCCTCGTTGACGGTTACAATGTCAAATTGGGGATAAGACCATCCGGAGGATCCG 450
| ||||||||||| || |||||||||||||| ||||||||||||||||||||||||| |
Sbjct 422 ATGTGAGCCTCGTAGATGGTTACAATGTCAAGCTGGGGATAAGACCATCCGGAGGATCGG 481
Query 451 GAGATTGCAAGTACGCAGGCTGTGTCGCCGACCTCAACGCGGCTTGCCCTGACGTGCTTA 510
|||||||||| ||||||||||||||| | |||||||||||||||||||| ||| ||||||
Sbjct 482 GAGATTGCAAATACGCAGGCTGTGTCTCTGACCTCAACGCGGCTTGCCCCGACATGCTTA 541
Query 511 AGGTCATGGATCAGAACAATGTCGTGGCGTGCAAGAGTGCCTGTGAGAGGTTTAATACGG 570
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 542 AGGTCATGGATCAGAACAATGTCGTGGCCTGCAAGAGTGCCTGTGAGAGGTTTAATACGG 601
Query 571 ATCAATATTGCTGCCGTGGAGCTAACAATACGCCGGAAACTTGTCCTCCCACGGAGTACT 630
|||||||||||||||||||||||||| ||| |||||||||||||||||||||||| ||||
Sbjct 602 ATCAATATTGCTGCCGTGGAGCTAACGATAAGCCGGAAACTTGTCCTCCCACGGACTACT 661
Query 631 CGAGGATTTTTAAGAACGCTTGCCCTGACGCCTATAGCTACGCTTATGACGATGAAACAA 690
|||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 662 CGAGGATTTTCAAGAACGCTTGCCCTGACGCCTATAGCTACGCTTATGACGACGAAACGA 721
Query 691 GCACCTTCACTTGTACTGGAGCTAACTACGAAATCACTTTCTGCCCATAAAAAGGCGAAG 750
|||||||||||||||| ||||||||||||||||||||||||||||| |||||| |||||
Sbjct 722 GCACCTTCACTTGTACCGGAGCTAACTACGAAATCACTTTCTGCCCTTAAAAAC-CGAAG 780
Query 751 CTTCGATTTAG 761
|||||| ||||
Sbjct 781 CTTCGAGTTAG 791
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36972332192
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5