BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926896
Length=1228
Score E
Sequences producing significant alignments: (Bits) Value
AT1G75160.1 | Symbols: | Protein of unknown function (DUF620) ... 1882 0.0
> AT1G75160.1 | Symbols: | Protein of unknown function (DUF620)
| chr1:28209437-28211804 FORWARD LENGTH=1465
Length=1465
Score = 1882 bits (1019), Expect = 0.0
Identities = 1160/1229 (94%), Gaps = 6/1229 (0%)
Strand=Plus/Plus
Query 3 aaaaaaaaaTATTTATAAATGAAAATGAGGAAGCTTTGTCCAAACTTGGACAGAGAAGAC 62
||||||||| | |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 80 AAAAAAAAAAAATTATAAATGAAAATGAGGAAGCTTTGTCCAAATTTGGACAGAGAAGAC 139
Query 63 GGGTTAGAGACGGTGTTAGAGGTTCCGGTGCCGGAAGAAATGTTTACGAAGATGGGAAGC 122
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 140 GGGTTAGAGACGGTGTTAGAGGTTCCGGTGCCGGAAGAAATGTTTACAAAGATGGGAAGC 199
Query 123 AATGCGGC-GGGGCGGTGGAGGAATATGCACGCTCTCATGAAGGCACACGCCGTTGTGAC 181
|| || | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 200 AACGC-CCAAGGGCGGTGGAGGAATATGCACGCTCTCATGAAGGCACACGCCGTTGTGAC 258
Query 182 CGCGGTGGCGACTGACGTCAA-AACGCCGGCGTCATCGTCATCGATGAGTAATGTCAATA 240
||||||||||||||| || || |||||||||||||||||||||||||||||||||||| |
Sbjct 259 CGCGGTGGCGACTGATGT-AAGAACGCCGGCGTCATCGTCATCGATGAGTAATGTCAACA 317
Query 241 TGCATTTGCAGTCAAAATCAGACAACGAGTTTGTGGCCTTGTTGAAAATCGTGGGAAGTC 300
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 318 TGCATTTGCAGTCAAAATCAGACAACGAGTTTGTGGCCTTGTTGAAAATCGTAGGAAGTC 377
Query 301 CTCTTATTCCTTTTCATGTCCCTCTCGAGTTTTGTCTCTCCCGACCCATCAACGACACTT 360
|||||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||
Sbjct 378 CTCTTATTCCTTTTCATGTCCCGCTCGAGTTTTGTCTATCCCGACCAATCAACGACACTT 437
Query 361 CCATCGAGGCGTCGACGGCTAAATACATAGTGCAACAGTACGTGGCAGCGTGCGGAGGTC 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 438 CCATCGAGGCGTCGACGGCTAAATACATAGTGCAACAGTACGTGGCAGCGTGCGGAGGTC 497
Query 421 CAGCGGCTTTGAACGCAGTGAAAAGCATGTACGCGGTGGGGCAGGTGAGGATGCAAGGCT 480
|| |||||||||||||||||||||| ||||||||||||||||| || |||||||||||||
Sbjct 498 CAACGGCTTTGAACGCAGTGAAAAGTATGTACGCGGTGGGGCAAGTAAGGATGCAAGGCT 557
Query 481 CCGAGATGGTTGCTGGAGAGGACCAAGGGACGGGTACGCCGGTGAGGCTGGGTAAAGGCA 540
||||||||||||||||||||||| |||||||||||||||||||| | || ||||||||||
Sbjct 558 CCGAGATGGTTGCTGGAGAGGACGAAGGGACGGGTACGCCGGTGCGACTTGGTAAAGGCA 617
Query 541 GTTTCGAGGTCGGAGGTTTTGTTTTATGGCAGAAGAATCCAAATCTTTGGTTCTTGGAGC 600
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 618 GTTTCGAGGTCGGAGGTTTTGTTTTATGGCAAAAGAATCCAAATCTTTGGTTCTTGGAGC 677
Query 601 TAGTGGTTTCCGGTTTCAAAATTAGCGCCGGTAGTGACGGCAAAGTGGCTTGGAACCAAT 660
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 678 TAGTGGTTTCCGGTTTCAAGATTAGCGCTGGTAGTGACGGCAAAGTGGCTTGGAACCAAT 737
Query 661 CCTCTACTCAACCTTCTCAGGCCCACCGTGGCCCTCCTCGTCCTCTCCGCCGCTTTTTTC 720
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 738 CCTCTACTCAACCTTCTCAGGCCCACCGTGGTCCTCCTCGTCCTCTCCGCCGATTTTTTC 797
Query 721 AGGGACTAGACCCGAGATGCACGGCAAGTCTATTCTTAGACGCTGTTTGCATCGGCGAAC 780
|||||||||||||||||||||| || ||| | ||||||||||| ||||||||||| ||||
Sbjct 798 AGGGACTAGACCCGAGATGCACAGCGAGTTTGTTCTTAGACGCCGTTTGCATCGGTGAAC 857
Query 781 AATCAGTTAACGGTGAAGACTGTTTTGTCTTAAA-GCTAGAAACACCGTCAGATATTCTC 839
|| | |||||||||||||||||||| |||||||| | |||||||||||||||||||||||
Sbjct 858 AACCCGTTAACGGTGAAGACTGTTTCGTCTTAAAAG-TAGAAACACCGTCAGATATTCTC 916
Query 840 AAGGCACAATGCTCACCAAACACGGAAGTGATCCACCACACGGTGTGGGGTTACTTCAGT 899
|| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 917 AAAGCACAATGCTCACCAAACACGGAGGTGATCCACCACACGGTATGGGGTTACTTCAGC 976
Query 900 CAACGAACGGGACTTCTCGTCAAGTTCGGTGACACAAAACTCGTGAGAGTCAAATCCGGT 959
|||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 977 CAACGAACCGGACTTCTCGTAAAGTTCGGTGACACAAAACTCGTGAGAGTCAAATCCGGA 1036
Query 960 AGAGGCAAAAGCGATGGCGTTTTTTGGGAGACAAGTATGGAGTCAATCATCGACGATTAC 1019
|||||||||| ||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1037 AGAGGCAAAAACGACGGCGTTTTTTGGGAGACAAGTATGGAGTCCATCATCGACGATTAC 1096
Query 1020 ATATTCGTTGACGCTGTAAACATAGCTCACGGCGGTCAAACTGTGACAACGCTTTATCGC 1079
|||||||||||||| || ||||| ||||| || |||||||| ||||| || || || |||
Sbjct 1097 ATATTCGTTGACGCAGTCAACATTGCTCATGGTGGTCAAACCGTGACCACACTCTACCGC 1156
Query 1080 TACGGCGGAGCTGTAAATCACCGGAGAAGAATAGAGGAGAAATGGCGGATCGAGGAGGTG 1139
||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1157 TACGGTGGAGCTGTTAATCACCGGAGAAGAATAGAGGAGAAATGGCGTATCGAGGAGGTG 1216
Query 1140 GATTTTAATATTTGTGGATTGTGTTTGGAGAGCTTTTTGCCACCGTCGGATATCAACAAC 1199
||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1217 GATTTCAATATTTGTGGATTGTGTTTGGAGAGCTTTTTACCACCGTCGGATATCAACAAT 1276
Query 1200 GATCATTAGGTACGGTGGAGAAATCGTTA 1228
|||||||||| ||| ||||||||||||||
Sbjct 1277 GATCATTAGGCACGATGGAGAAATCGTTA 1305
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60341055090
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5