BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926898
Length=936
Score E
Sequences producing significant alignments: (Bits) Value
AT1G75170.1 | Symbols: | Sec14p-like phosphatidylinositol tran... 1520 0.0
AT5G04781.1 | Symbols: | Pseudogene of AT1G75170; SEC14 cytoso... 708 0.0
> AT1G75170.1 | Symbols: | Sec14p-like phosphatidylinositol transfer
family protein | chr1:28213807-28215887 FORWARD LENGTH=1294
Length=1294
Score = 1520 bits (823), Expect = 0.0
Identities = 901/939 (96%), Gaps = 4/939 (0%)
Strand=Plus/Plus
Query 1 TGGACCC-AAGTGCAATTCTC-AAAATGTTTCGATGGAAGAATTCTTCGCAAACCGAACA 58
||||||| |||||||||| || ||||||||||| |||||||||||||| |||||||||||
Sbjct 178 TGGACCCAAAGTGCAATTTTCAAAAATGTTTCGCTGGAAGAATTCTTCTCAAACCGAACA 237
Query 59 AGAGCATAATGAGACAGCTCTCAGAGAGGCAAAGATGAAAGAGCTTAAGGCTCTCATAGG 118
|||||| || ||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 238 AGAGCAGAAAGAGGCAGCTCTCAGAGAGGCAAAGATGAAAGAGCTTAAGACTCTCATAGG 297
Query 119 TCAGCTTTCTGGAAGGAGTTCACTGTATTGTTCAGATGCATGTCTGAAGAGATATCTGGA 178
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 TCAGCTTTCTGGAAGGAATTCACTGTATTGTTCAGATGCATGTCTGAAGAGATATCTGGA 357
Query 179 AGCTAGGAATTGGAACGTAGGCAAAGCCAA-AAGGATGCTCGAGGAGACTCTGAAATGGA 237
||||||||||||||| |||||||||||||| || ||||||||||||||| || |||||||
Sbjct 358 AGCTAGGAATTGGAATGTAGGCAAAGCCAAGAA-GATGCTCGAGGAGACGCTCAAATGGA 416
Query 238 GATCGACTTTTAAACCCGAGGAAATCCGATGGAATGAAGTTTCAGGTGAAGGTGAGACTG 297
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 GATCGAGTTTTAAACCCGAGGAAATCCGATGGAATGAAGTTTCAGGTGAAGGTGAGACTG 476
Query 298 GTAAAGTTTACAAAGCTGGATTCCATGACAGGCATGGAAGAACGGTTCTTATACTGAGAC 357
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 GTAAGGTTTACAAAGCTGGATTCCATGACAGGCATGGAAGAACGGTTCTTATACTGAGAC 536
Query 358 CCGGCTTGCAGAACACAAAATCGTTGGAGAACCAGATGAAACATCTGGTGTATCTCATTG 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 CCGGCTTGCAGAACACAAAATCGTTGGAGAACCAGATGAAACATCTGGTGTATCTCATTG 596
Query 418 AGAATGCTATTCTGAATCTTCCAGAGGATCAAGAACAGATGTCTTGGCTTATTGACTTCA 477
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 597 AGAATGCTATTCTGAATCTGCCAGAGGATCAAGAACAGATGTCTTGGCTTATTGACTTCA 656
Query 478 CGGACTGGTCAATGAGCACTAGTGTGCCTATTAAATCTGCCAGAGAAACTATAAATATAC 537
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 657 CGGGTTGGTCAATGAGCACTAGTGTGCCTATTAAATCTGCCAGAGAAACTATTAATATTC 716
Query 538 TGCAAAATCACTACCCAGAGAGACTAGCTGTAGCTTTCCTTTATAATCCTCCAAGAATCT 597
|||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||
Sbjct 717 TGCAAAATCACTACCCTGAGAGACTAGCTGTAGCTTTCCTCTATAATCCTCCAAGACTCT 776
Query 598 TTGAGGCATTCTGGAAGATTGTGAAGTACTTCATTGATGCAAAGACGTTCGTCAAGGTGA 657
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 777 TTGAGGCGTTCTGGAAGATTGTGAAGTACTTCATTGATGCAAAGACATTCGTCAAGGTGA 836
Query 658 AATTTGTTTACCCAAAGAACCCGGAAAGCGTGGAGCTTATGAGCACATTTTTCGACGAGG 717
| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 837 AGTTTGTTTACCCAAAGAACTCGGAAAGCGTGGAGCTTATGAGCACATTTTTCGACGAGG 896
Query 718 AAAATCTCCCAACCGAATTTGGAGGGAAAGCTTTGTTGCAGTATAACTATGAAGAATTCT 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 897 AAAATCTCCCAACCGAATTTGGAGGGAAAGCTTTGTTGCAGTATAACTATGAAGAGTTCT 956
Query 778 CCAAGCAAATGAACCAAGACGATGTTAAAACTGCAAACTTTTGGGGATTGGGTCACAGTA 837
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 957 CCAAGCAAATGAACCAAGACGATGTTAAAACTGCTAACTTTTGGGGATTGGGTCACAGTA 1016
Query 838 ACAATAACCAGCTGCACGTGAGCAACGGGTTTTCTGGAGCCGAGATTGCCCCTGAGCCAA 897
|||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct 1017 ACAATAACCAGCTGCACGCGAGCAACGGGTTTTCTGGAGCTGAGATTGCCCCTGAGCCAA 1076
Query 898 TCCAAACCCACCCTTGACCGGTTTTGAAGGCAGTGAATT 936
|||||| ||||||||||| |||| |||||||| || |||
Sbjct 1077 TCCAAAACCACCCTTGACTGGTTCTGAAGGCAATGTATT 1115
> AT5G04781.1 | Symbols: | Pseudogene of AT1G75170; SEC14 cytosolic
factor family protein / phosphoglyceride transfer family
protein | chr5:1386686-1387731 FORWARD LENGTH=864
Length=864
Score = 708 bits (383), Expect = 0.0
Identities = 470/509 (92%), Gaps = 18/509 (4%)
Strand=Plus/Plus
Query 406 TGTATCTCATTGAGAATGCTATTCTGAATCTTCCAGAGGATCAAGAACAGATGTCTTGGC 465
|||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 374 TGTATCTCATTGCGAATGCTATTCTGAATCTGCCAGAGGATCAAGAACAGATGTCTTGGC 433
Query 466 TTATTGACTTCACGGACTGGTCAATGAGCACTAGTGTGCCTATTAAATCTGCCAGAGAAA 525
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 434 TTATTGACTTCACGGGTTGGTCAATGAGCACTAGTGTGCCTATTAAATCTGCCAGAGAAA 493
Query 526 CTATAAATATACTGCAAAATCACTACCCAGAGAGACTAGCTGTAGCTTTCCTTTATAATC 585
|||| || |||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 494 CTATTAACATACTGCAAAATCACTACCCTGAGAGACTAGCTGTAGCTTTCCTCTATAATC 553
Query 586 CTCCAAGAATCTTTGAGGCATTCTGGAAGATTGTGAAGTACTTCATTGATGCAAAGACGT 645
|||||||| ||||||||||||||||| | | | | | ||||||||| |
Sbjct 554 CTCCAAGACTCTTTGAGGCATTCTGG-A-A----G--G--------T--TGCAAAGACAT 595
Query 646 TCGTCAAGGTGAAATTTGTTTACCCAAAGAACCCGGAAAGCGTGGAGCTTATGAGCACAT 705
||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 596 TCGTCAAGGTGAAGTTTGTTTACCCAAAGAACCAGGAAAGCGTGGAGCTTATGAGCACAT 655
Query 706 TTTTCGACGAGGAAAATCTCCCAACCGAATTTGGAGGGAAAGCTTTGTTGCAGTATAACT 765
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 656 TTTTCGACGAGGAAAATCTCCCAACCGAATTTGGAGGGAAAGCTTTGTTGCAATATAACT 715
Query 766 ATGAAGAATTCTCCAAGCAAATGAACCAAGACGATGTTAAAACTGCAAACTTTTGGGGAT 825
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 ATGAAGAGTTCTCTAAGCAAATGAACCAAGACGATGTTAAAACTGCAAACTTTTGGGGAT 775
Query 826 TGGGTCACAGTAACAATAACCAGCTGCACGTGAGCAACGGGTTTTCTGGAGCCGAGATTG 885
|| || |||||||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 776 TGTGTAACAGTAACAATAACCAGCTGCACGCGAGCAACGGGTTTTCTGGAGCTGAGATTG 835
Query 886 CCCCTGAGCCAATCCAAACCCACCCTTGA 914
||||||||||| ||||||| |||||||||
Sbjct 836 CCCCTGAGCCAGTCCAAACACACCCTTGA 864
Score = 460 bits (249), Expect = 8e-129
Identities = 266/274 (97%), Gaps = 2/274 (1%)
Strand=Plus/Plus
Query 96 AAAGAGCTTAAGGCTCTCATAGGTCAGCTTTCTGGAAGGAGTTCACTGTATTGTTCAGAT 155
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4 AAAGAGCTTAAGGCTCTCATAGGTCAGCTTTCTGGAAGGAGTTCACTGTATTGTTCAGAT 63
Query 156 GCATGTCTGAAGAGATATCTGGAAGCTAGGAATTGGAACGTAGGCAAAGCCAA-AAGGAT 214
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||
Sbjct 64 GCATGTCTGAAGAGATATCTGGAAGCGAGGAATTGGAACGTAGGCAAAGCCAAGAAG-AT 122
Query 215 GCTCGAGGAGACTCTGAAATGGAGATCGACTTTTAAACCCGAGGAAATCCGATGGAATGA 274
| |||||||||| |||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 123 GTTCGAGGAGACGCTGAAATGGAGATCGAGTTTTAAACCCGAGGAAATCTGATGGAATGA 182
Query 275 AGTTTCAGGTGAAGGTGAGACTGGTAAAGTTTACAAAGCTGGATTCCATGACAGGCATGG 334
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 183 AGTTTCAGGTGAAGGTGAGGCTGGTAAAGTTTACAAAGCTGGATTCCATGACAGGCATGG 242
Query 335 AAGAACGGTTCTTATACTGAGACCCGGCTTGCAG 368
||||||||||||||||||||||||||||||||||
Sbjct 243 AAGAACGGTTCTTATACTGAGACCCGGCTTGCAG 276
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45763307917
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5