BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926900
Length=1993
Score E
Sequences producing significant alignments: (Bits) Value
AT1G75200.1 | Symbols: | flavodoxin family protein / radical S... 3201 0.0
> AT1G75200.1 | Symbols: | flavodoxin family protein / radical
SAM domain-containing protein | chr1:28220626-28223709 REVERSE
LENGTH=2279
Length=2279
Score = 3201 bits (1733), Expect = 0.0
Identities = 1887/1963 (96%), Gaps = 4/1963 (0%)
Strand=Plus/Plus
Query 4 AGTTCCAA-TCCTCCGTTATGTCAACGACTTCCTCCGTGCGTGCTCGACTAGCTTTCGTT 62
|||| ||| || ||||| ||||| ||||||||||||||||||| ||||||||||||||||
Sbjct 96 AGTT-CAAGTCTTCCGTCATGTCTACGACTTCCTCCGTGCGTGTTCGACTAGCTTTCGTT 154
Query 63 GCTTTACTCTCAGCGACGACTTTTTACTGTATCCATAAATACCGCCGCTTGAAACGTCTG 122
|| |||||||||||||||||||||||||||||||||||||| || |||||||||| ||||
Sbjct 155 GCGTTACTCTCAGCGACGACTTTTTACTGTATCCATAAATATCGTCGCTTGAAACATCTG 214
Query 123 AAAAACCTCTCGTTAAACCCTAGCTCTACCTCGAAAGCCAGCAGAGGAAAGATCTTCTTC 182
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 215 AAAAACCTCTCGTTAAACCCTAGCTCTACATTGAAAGCCAGCAGAGGAAAGATCTTCTTC 274
Query 183 ATCTCCCAAACTGGTACAGCTAAAGCCTTAGCTCAACGGCTTTACGAGCTATGCGCATCT 242
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 275 ATCTCCCAAACTGGTACAGCTAAAGCCTTAGCTCAACGGCTTCACGAGCTATGCGCATCT 334
Query 243 AACGACATAGCATTTGATCTCGTCGATCCACGGAGCTACGAACCTGAAGATCTCCCTAAA 302
|||||||||||||||||| |||||||||||| |||||||||||||||||||| ||||||
Sbjct 335 AACGACATAGCATTTGATATCGTCGATCCACATAGCTACGAACCTGAAGATCTACCTAAA 394
Query 303 GAAACCCTAGTTTTATTCATCGCGTCGACTTGGGATGGCGGGAAACCGCCTAAGAACGGA 362
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 395 GAAACCCTAGTTTTATTCATCGCGTCGACTTGGGATGGCGGGAAGCCGCCTAAGAACGGA 454
Query 363 GAGTTTCTTGTGAACTGGCTTGGTGAGAGCGCTGAGGATTTCCGAGTCGGCTCGCTTCTT 422
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 455 GAGTTTCTTGTGAACTGGCTTGGTGAGAGCGCTGAAGATTTCCGAGTCGGCTCGCTTCTT 514
Query 423 CTCTCCGATTGCAAATTCGCTGTTTTCGGTGTCGGCAGCCGTGCGTATGGTGAATCGTAT 482
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 515 CTCTCCGATTGCAAATTCGCTGTTTTCGGTGTCGGGAGCCGTGCGTATGGTGAATCGTAT 574
Query 483 AATGCTGTGGCGAAGGAATTGTCGAGTAGGATGATAGGATTGGGTGGACTCGAGATGATT 542
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 575 AATGCTGTGGCGAAGGAATTGTCGAGTAGGATGATAGGACTGGGTGGACTCGAGATGATT 634
Query 543 CCGGTGGGAGAAGGCGATGTTGATGACGGAGAATTAGACAGAGCATTTCAAGATTGGTGT 602
|||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||
Sbjct 635 CCGGTGGGAGAAGGCGATGTTGATGATGGAGAATTAGATAGAGCATTTCAAGACTGGTGT 694
Query 603 -ACTGGAGTTATTAGGGTTCTGAAAGGAGGTTCTGCTCAAGAAACAAATGGGGTTTCGCA 661
| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 695 GA-TGGAGTTATTAGGGTTCTGAAAGGAGGATCTGCTCAAGAAACAAATGGGGTTTCGCA 753
Query 662 GCAGATTGGTGCTGTTGAGAATGATCTTGAGTACTACGATTCAACGGATGATGAAGATGA 721
||||||||||||||||||| ||||||| ||||||||||||||||| ||||| ||||||||
Sbjct 754 GCAGATTGGTGCTGTTGAGGATGATCTGGAGTACTACGATTCAACAGATGAGGAAGATGA 813
Query 722 AGAAAATGATGCAGATGGAGGTATTGTTGATCTTGAAGATATTGCTGGAAAAGCTCCTTC 781
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 814 AGACAATGATGCAGACGGAGGTATTGTTGATCTTGAAGATATTGCTGGAAAAGCTCCTTC 873
Query 782 GAAGAGAAATGGCGTAGTTAAAGTGACTAAAGTTGATGGAAAGAAGGAAATGGTAACCCC 841
||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 874 AAAGAGAAATGGTGTAGTTAAAGTGACTAAAGTTGATGGAAAGAAGGAAATGGTGACCCC 933
Query 842 TGTGATTAGAGCAAGCTTAACGAAGCAGGGCTATAAAATAATTGGTTCGCATAGTGGGGT 901
||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||
Sbjct 934 TGTGATTAGAGCAAGCTTAACGAAGCAGGGCTATAAAATTATCGGGTCGCATAGTGGGGT 993
Query 902 TAAAATATGTAGATGGACAAAGTCACAACTTAGAGGCAGGGGTGGTTGCTACAAGCACTC 961
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 994 TAAGATATGTAGATGGACAAAGTCACAACTTAGAGGCAGGGGAGGTTGCTACAAGCACTC 1053
Query 962 CTTTTATGGCATTGAGAGTCACAGGTGCATGGAGACAACACCTAGTTTGGCCTGTGCAAA 1021
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1054 CTTTTATGGCATTGAGAGTCACAGGTGCATGGAGACAACACCTAGTTTGGCTTGTGCAAA 1113
Query 1022 CAAATGTGTCTTTTGTTGGAGGCATCACACCAATCCTGTGGGAAAGAGCTGGCAGTGGAA 1081
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1114 CAAATGTGTGTTTTGTTGGAGGCATCACACAAATCCTGTGGGAAAGAGCTGGCAGTGGAA 1173
Query 1082 GATGGATGAGCCGTCTGTGATTGTGAAAGGTGCTCTTGATCTTCATACAAAGATGATTAA 1141
|||||||||||| || |||||||||||||| |||||||||||||||| ||| ||||||||
Sbjct 1174 GATGGATGAGCCTTCAGTGATTGTGAAAGGCGCTCTTGATCTTCATAAAAATATGATTAA 1233
Query 1142 GCAAATGAAAGGAGTTCCAGGTGTAACTCCAGAGAAATTACAAGAAGGTCTAAACCCAAG 1201
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1234 GCAAATGAAAGGAGTTCCAGGTGTAACTCCAGAGAAATTACAAGAAGGTCTTAACCCAAG 1293
Query 1202 ACATTGTGCGTTGTCACTTGTTGGTGAGCCGATTATGTATCCGGAGATCAATGCCCTTGT 1261
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1294 ACATTGTGCGTTATCACTTGTTGGTGAGCCGATTATGTATCCGGAGATCAATGCCCTTGT 1353
Query 1262 AGATGAGCTACATGGAAGGCGTATCTCTACATTTTTGGTTACTAATGCACAATTCCCTGA 1321
|||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||| ||
Sbjct 1354 AGATGAGCTACATGGAAGGCGTATTTCTACGTTTTTGGTTACAAATGCACAATTCCCCGA 1413
Query 1322 AAAGATTTTGATGATGAAGCCTATCACCCAGTTGTACGTAAGTGTAGATGCTGCCACCAA 1381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1414 AAAGATTTTGATGATGAAGCCTATCACCCAGTTGTACGTAAGTGTAGATGCTGCCACCAA 1473
Query 1382 AGAGAGCTTGAAGGCCATTGATAGACCTCTCTTTGCTGACTTTTGGGAGCGGTTTATTGA 1441
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 1474 AGAGAGCTTGAAGGCCATTGATAGACCTCTCTTTGCTGACTTTTGGGAACGGTTCATTGA 1533
Query 1442 CTCCTTGAAAGCTCTCCAAGAGAAGCAGCAGCGAACCGTCTACCGTTTAACACTTGTCAA 1501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1534 CTCCTTGAAAGCTCTCCAAGAGAAGCAGCAGCGAACCGTCTACCGTTTAACACTTGTCAA 1593
Query 1502 AGGATGGAATACAGAGGAGCTAGATGCTTATTTCAACCTCTTCAGCATTGGGAAACCTGA 1561
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1594 AGGATGGAACACAGAGGAGCTAGATGCTTATTTCAACCTATTCAGCATTGGGAAACCTGA 1653
Query 1562 TTTCATCGAGATCAAAGGCGTCACATACTGCGGATCCTCTGCAACATCAAAGTTGACAAT 1621
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1654 TTTTATCGAGATCAAAGGCGTCACATACTGCGGATCCTCTGCAACGTCAAAGTTGACAAT 1713
Query 1622 GGAGAATGTACCTTGGCACGCAGATGTTAAAGCATTCTCAGAGGCTCTGTCTCTGAAGAG 1681
|||||||||||| |||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct 1714 GGAGAATGTACCGTGGCACACAGATGTTAAAGCATTCTCAGAAGCTCTGTCTCTGAAGAG 1773
Query 1682 CAATGGGGAGTACGAGGTTGCTTGCGAGCACGCCCATTCTTGTTGTGTTCTTCTAGGGAG 1741
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 1774 CAATGGGGAGTACGAGGTTGCTTGCGAGCACGCCCACTCTTGCTGTGTTCTTCTAGGGAG 1833
Query 1742 AACCGAAAAGTTCAAAGTGGATGGAAAGTGGTTCACTTGGATTGACTATGAAAAGTTCCA 1801
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1834 AACGGAAAAGTTCAAAGTGGATGGAAAGTGGTTCACTTGGATTGACTATGAAAAGTTCCA 1893
Query 1802 CGATCTGGTGGCTTCTGGAGAACCTTTCACGAGCACAGACTATATGGCTCAGACACCATC 1861
||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 1894 CGATCTGGTTGCTTCTGGAGAACCGTTCACGAGCACAGACTATATGGCTCAAACACCATC 1953
Query 1862 GTGGGCGGTTTATGGAGCACAGGAAGGTGGGTTTGATCCAGAGCAGTTGCGTTACAAGAA 1921
|||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 1954 GTGGGCGGTTTATGGAGCGCAGGAAGGTGGGTTTGATCCAGGGCAGTTGCGTTACAAGAA 2013
Query 1922 GGAAAGGCATCATCATCCTAAACCACAAGCGGTTCTAGCTTAA 1964
||||||| |||||| |||||||||||| |||||| ||||||||
Sbjct 2014 GGAAAGGAATCATCCTCCTAAACCACAGGCGGTTTTAGCTTAA 2056
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98744472015
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5