BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926901
Length=1970
Score E
Sequences producing significant alignments: (Bits) Value
AT1G75210.1 | Symbols: | HAD-superfamily hydrolase, subfamily ... 3217 0.0
> AT1G75210.1 | Symbols: | HAD-superfamily hydrolase, subfamily
IG, 5'-nucleotidase | chr1:28223869-28228975 FORWARD LENGTH=2274
Length=2274
Score = 3217 bits (1742), Expect = 0.0
Identities = 1895/1971 (96%), Gaps = 2/1971 (0%)
Strand=Plus/Plus
Query 1 TCGCCGGCGAATTTCCGGTAAATGTCTGAGTGGTTAATCAGTACGAATCCTACTTTTTCG 60
||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 101 TCGCCGGCGAATTTCCGGTAAATGTCTGAGTGGTTTATCAGTAGGAATCCTACTTTTTCG 160
Query 61 ACGGCATTCCCAAGTAGTTGTTTTACAGTTGTAAAACCCAATTTTATTCTCCTTTCTTCG 120
||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 161 ACGGCATTCCCAAGTAGTTGTATTACAGTTGTAAATCCCAATTTTATTCTCCTTTCTTCA 220
Query 121 GAATTCGATTCGTATACTCCTCAATGCCTATTTAATAGCTTAACCACCACCATGCGtctc 180
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 221 GAATTCGATTCGTATACTCCTCAATGCCTATTTAATAGTTTAACCACCACCATGCGTCTC 280
Query 181 tctaaacgccaactttctcttcctttttctctctg-tgtctctactttctctcctcgttt 239
|||||||||||||| || |||||| |||||||||| | |||||||||||||||||||||
Sbjct 281 TCTAAACGCCAACTCTCGCTTCCTCTTTCTCTCTGCT-TCTCTACTTTCTCTCCTCGTTC 339
Query 240 ccgtttccatcattttccCGGAAAATTTCCAGCTCCTCGTAGAGAATCTCTCTACACCAC 299
|||||||||||||||||| ||||||| |||||||||||| ||||||| |||| |||| ||
Sbjct 340 CCGTTTCCATCATTTTCCTGGAAAATATCCAGCTCCTCGAAGAGAATTTCTCCACACTAC 399
Query 300 TGGGACAAGCCAGCTGTGTTTTAAGAGTTCGATGGAAGATCTGAAACCGACTGCTCTCAG 359
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 400 TGGGACAAGCCAGCTGTGTTTTAAGAGTTCGATGGAAGATCAGAAACCGAGTGCTCTCAG 459
Query 360 TGAAAATGTGTTGCAGTTTCACACTGTGGGCTCCAGGGATGGATGTGAAGTTCCCCATAA 419
|||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |
Sbjct 460 TGAAAATGTGTTGCAGTTTCACACTGTGGGCTCCAGAGATGGATGTGACGTTCCCCATGA 519
Query 420 ATGGTCCTCCCCGGAAGGAGGAAAGAAAATTGATATAAGCAATCAGATTTTCTGCAATAG 479
||||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 520 ATGGTCCTCTCCGGAAGGAGGAAAGAAAATTGATATAAGCAACCAAATTTTCTGCAATAG 579
Query 480 ATCGTTGAATATGAAAAATATCATTGCCGTAGGCTTTGATATGGACTACACTCTTGCTCA 539
|||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 580 ATCGCTGAATATGAAAAATATTATTGCCGTAGGCTTTGATATGGACTACACTCTTGCCCA 639
Query 540 ATACAAGTCCGAAACTTTCGAGTCCCTTGCTTATGAAGGAACTGTCAGGAAATTGGTTTA 599
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 640 ATACAAGTCCGAAACTTTCGAGTCCCTTGCTTATGACGGAACTGTCAGGAAATTGGTATA 699
Query 600 TGATTTGGGGTATCCAAATGAGCTGCTAGAGTGGACATTTGATTGGAATTACATGGTTAG 659
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 700 TGATTTGGGATATCCAAATGAGCTGCTAGAGTGGACATTTGATTGGAATTACATGGTTAG 759
Query 660 AGGCTTGGTGCTTGACAAAAAGAGGGGAAACATCTTAAAGATGGACCGCCATAAATATGT 719
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 760 AGGCTTGGTGCTTGACAAAAAGAGGGGAAACATCTTAAAGATGGATCGCCATAAATACGT 819
Query 720 GAAAGTAGCTTACCATGGGTTTAGGGAGCTCTCTAAGGAAGACAAAGTTGACATCTACGG 779
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||
Sbjct 820 GAAAGTAGCTTACCATGGGTTTAGGGAGCTCTCTAAGGAAGATAAAGTTGAAATCTATGG 879
Query 780 AAGCAGCCTAGTACGAGATTCCTTTGATGAACCCGACTACGCTCTCATAGATACTCTCTT 839
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 880 GAGCAGCCTAGTACGAGATTCTTTTGATGAACCCGACTACGCTCTCATAGATACTCTCTT 939
Query 840 TTCACTGGCCGAAGCCTATCTGTTCGCTCAACTCGTTGATTTTAAAGATAATAACCCAGA 899
||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||| ||
Sbjct 940 TTCACTGGCCGAAGCCTATTTGTTCGCTCAACTTGTTGACTTTAAAGATAATAACCCTGA 999
Query 900 AAAGGTTCCCAAGGACGTTGATTATGCTCGGATGTACAAAGATGTTCGTGCTGCTGTTGA 959
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1000 AAAAGTTCCCAAGGACGTTGATTATGCTCGGATGTATAAAGATGTTCGTGCTGCTGTTGA 1059
Query 960 TTTGTGCCACCGCGACGGGACTTTAAAGCAGATGGTGGCAAAAGAACCTAATAGGTATAT 1019
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1060 TTTGTGCCACCGTGACGGAACTTTAAAGCAGATGGTGGCAAAAGAACCTAATAGGTATAT 1119
Query 1020 CAATGAGGATACCACTATAGTACCCCTCATTAAAATGATCAGAGATTCTGGACGTTCTAC 1079
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1120 CAATGAGGATACCACGATAGTACCCCTTATTAAAATGATCAGAGATTCTGGACGTTCTAC 1179
Query 1080 ATTCTTGGTGACCAATAGTTTGTGGGACTACACAAATATTGTAATGAACTTTCTCTGTGG 1139
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1180 ATTCTTAGTAACCAATAGTTTGTGGGACTACACAAATATTGTAATGAACTTTCTCTGCGG 1239
Query 1140 AGGGCGCACGGTACATGGTCCGCATACTTGCAACTTTGATTGGCTCCAGTATTTTGATGT 1199
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1240 AGGGCGCACAGTACATGGTCCGCATACTTGCAACTTTGATTGGCTCCAGTATTTTGATGT 1299
Query 1200 TGTGATCACTGGCAGTGCAAAACCTGGTTTCTTCCATGAAGAGAGCCGTGCTAATCTTTT 1259
||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||
Sbjct 1300 TGTGATCACTGGCAGTGCAAAACCTGGGTTCTTCCATGAAGATAGCCGTGCTAACCTTTT 1359
Query 1260 TGAGGTGGAACCTCAGTCTGGAATGCTTATTAATACTGACAATGGAACACCTATGGCTCA 1319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1360 TGAGGTGGAACCTCAGTCTGGAATGCTTATTAATACTGACAATGGAACACCTATGGCTCA 1419
Query 1320 GGTGGGAGATCCTTCACCAAATTTTTTACTGAAGAGTAAAGATAAAGGTTGTCGAGTTTT 1379
||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 1420 GGTGGGAGATCCTTCACCAAAAATCTTACTGAAGAGTAAAGATAAAGGTTGTCGAGTTTT 1479
Query 1380 TCAAGGTGGAAATGTCGGGCATCTTCACAGTTTGCTCTCAATTGAGTCAAGTTCACAGGT 1439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1480 TCAAGGTGGAAATGTCGGGCATCTTCACAGTTTGCTCTCAATTGAGTCAAGTTCACAGGT 1539
Query 1440 ACTTTATGTTGGTGATCATATATACGGTGATATCTTGCGCAGCAAAAAAGTACTTGGCTG 1499
|||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1540 ACTTTATGTTGGGGATCATATATACGGTGATATCTTGCGCAGCAAAAAAATACTTGGCTG 1599
Query 1500 GAGAACTATGCTTGTAGTTCCAGAATTAGAAAAAGAGGTTGAACTTTTATGGGAACTGAG 1559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1600 GAGAACTATGCTTGTAGTTCCAGAATTAGAAAAAGAGGTTGAACTTTTATGGGAACTGAG 1659
Query 1560 GAATATGCGTAAGGAACTTATTTTGATGAGAAATGAGCGTGATTCAGTTGAAGACAAAAT 1619
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1660 GAATATGCGTAAGGATCTTATTTTGATGAGAAATGAGCGTGATTCAGTTGAAGACAAAAT 1719
Query 1620 TCATCACTTGAATTGGTCCCTAAAGTTTGAAGATATCAACGAGAATGATAAGCAGGAAAT 1679
|||||||||||||||||| ||||||||||| ||||||||||||||| ||||||| |||||
Sbjct 1720 TCATCACTTGAATTGGTCTCTAAAGTTTGAGGATATCAACGAGAATAATAAGCACGAAAT 1779
Query 1680 GTTATCAGCGCTCAAGGACTTAGAGTCTAAAAGAGATCAAGTACGACTGAGTCATCAACA 1739
||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 1780 GTTATCAGCGCTCAAGGACTTAGAGTCTAAAAGAGATAAAGTACGACAGAGTCATCAACA 1839
Query 1740 AGCTCAAAGAGAATGTCACCAAAAGTTTCACAAGGTGTGGGGGCAACTGATGAAAACAGG 1799
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 1840 AGCTCAAAGAGAATGTCACCAAAAGTTTCACAAGGTCTGGGGGCAACTGATGAAAACTGG 1899
Query 1800 CTACCAGGGTTCTCGATTTGCTCACCAGGTAGAGAGATTTGCATGCCTGTACACAAGCCA 1859
||||||| |||||||||||||||| ||||| || ||||| ||||||||||||||||||||
Sbjct 1900 CTACCAGAGTTCTCGATTTGCTCATCAGGTGGAAAGATTCGCATGCCTGTACACAAGCCA 1959
Query 1860 AGTCTCAAACCTACGCTTGTACTCACCAGACAAGTATTACAGACCCAGTGAAGACTTCAT 1919
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1960 AGTCTCAAACCTACGCTTGTACTCACCAGACAAGTATTACAGACCCAGTGAAGACTTCAT 2019
Query 1920 GTCCCATGAATTTCACCTTCTTCCTCTGTGATTCATCCCAATGACCTCTAT 1970
||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2020 GTCCCATGAATTTCACCTTCTTCCTCTGTGATTCAGCCCAATGACCTCTAT 2070
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97589859480
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5