BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926904
Length=971
Score E
Sequences producing significant alignments: (Bits) Value
AT1G75240.1 | Symbols: AtHB33, HB33, ZHD5 | homeobox protein 33... 1544 0.0
> AT1G75240.1 | Symbols: AtHB33, HB33, ZHD5 | homeobox protein
33 | chr1:28241072-28242756 FORWARD LENGTH=1608
Length=1608
Score = 1544 bits (836), Expect = 0.0
Identities = 932/975 (96%), Gaps = 19/975 (2%)
Strand=Plus/Plus
Query 2 TTAATCTCCAAGAAGACAAAATGGATATGAGAAGCCATGAAATGATAGAGAGAAGAAGAG 61
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 409 TTAATCTCCAAGAA-AAAAAATGGATATGAGAAGCCATGAAATGATAGAGAGAAGAAGAG 467
Query 62 AAGACAATGGCAACAACAATGGTGGTGGTGTTATTAGTAACATCATTAGCACT-A-A-TG 118
||||||||||||||||||||||||||| ||||||||||||||||||||| ||| | | ||
Sbjct 468 AAGACAATGGCAACAACAATGGTGGTGTTGTTATTAGTAACATCATTAGTACTAATATTG 527
Query 119 ATGATAATTGCAATGGTAATAACAACAACAACAACACTCGTGTCGCTTGCAACTCTCAAA 178
|||||||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct 528 ATGATAATTGCAATGGTAAT------AACAACAACACTCGTGTCTCTTGCAACTCTCAAA 581
Query 179 CCCTAGATCACCACCAATCCAAGTCTCCGTCTTCGTTTTCCATCTCCGCCGCAGCTAAAC 238
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 582 CCCTAGATCACCACCAATCCAAGTCTCCCTCTTCGTTTTCCATCTCCGCCGCAGCTAAAC 641
Query 239 CCACCGTAAGGTACCGTGAGTGTCTGAAGAATCACGCGGCCAGCGTCGGCGGAAGTGTAC 298
|||||||||| |||||||||||||| |||||||| ||||| ||||||||||||||||| |
Sbjct 642 CCACCGTAAGATACCGTGAGTGTCTAAAGAATCATGCGGCGAGCGTCGGCGGAAGTGTTC 701
Query 299 ACGACGGATGCGGCGAGTTTATGCCGAGTGGTGAAGAAGGAACAATCGAAGCTCTCAGAT 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 702 ACGACGGATGCGGCGAGTTTATGCCGAGTGGTGAAGAAGGAACAATCGAAGCTCTCAGAT 761
Query 359 GCGCTGCTTGTGATTGTCACCGTAATTTCCACCGGAAAGAAATGGACGGCGTTGGAAGCT 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 762 GCGCTGCTTGTGATTGTCACCGTAATTTCCACCGGAAAGAAATGGACGGCGTTGGAAGCT 821
Query 419 CGGATTTGATCTCTCACCACCGTCATCACCACCACCACCATAACCAGTACGGTGGAGGAG 478
|||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct 822 CGGATTTGATCTCTCACCACCGTCATCACCACTACCACCATAACCAATACGGTGGAGGAG 881
Query 479 G-G--AGAAGACCTCCGCCGCCGAATATGATGCTTAACCCACTCATGCTTCCTCCGCCGC 535
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 882 GAGGGAGAAGACCTCCGCCGCCGAATATGATGCTTAACCCACTCATGCTTCCTCCGCCAC 941
Query 536 CGAATTATCAGCCGATTCACCACCACAAGTATGGAATGAGTCCTCCCGGAGGAGGAGGAA 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 942 CGAATTATCAGCCGATTCACCACCACAAGTATGGAATGAGTCCTCCCGGAGGAGGAGGAA 1001
Query 596 TGGTGACGCCGATGAGCGTTGCTTACGGCggaggaggaggaggaggagCTGAGTCGTCTA 655
||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 1002 TGGTGACGCCGATGAGCGTTGCTTACGGCGGTGGAGGAGGAGGAG---CTGAGTCGTCTA 1058
Query 656 GTGAAGATCTGAATCTGTACGGACAATCAAGCGGAGAAGGAGCTGGTGCGGCGGCGGGAC 715
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1059 GTGAAGATCTGAATCTGTACGGACAATCAAGCGGAGAAGGAGCTGGTGCGGCGGCGGGAC 1118
Query 716 AAATGGCGTTTTCGATGTCGTCGTCGAAGAAAAGATTCAGGACAAAGTTCACGACGGAGC 775
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 1119 AAATGGCGTTTTCGATGTCGTCGTCTAAGAAAAGATTCAGGACAAAGTTCACGACGGATC 1178
Query 776 AGAAGGAGAGGATGATGGAGTTTGCGGAGAAGCTAGGGTGGAGGATGAACAAACAAGACG 835
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 1179 AGAAGGAGAGGATGATGGACTTTGCGGAGAAGCTAGGGTGGAGGATGAACAAGCAAGACG 1238
Query 836 AAGAAGAGCTTAAAAGATTCTGCGGTGAGATCGGAGTTAAGAGACAAGTCTTCAAAGTTT 895
||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 1239 AAGAAGAGCTTAAGAGATTCTGCGGCGAGATCGGAGTGAAGAGACAAGTCTTCAAAGTTT 1298
Query 896 GGATGCATAACAACAAGAACAATGCCAAGAAACCAGCAACACCAACAACT-CTCTAATCA 954
||||||||||||||||||||||||| ||||||||| |||||||||||||| |||| | |
Sbjct 1299 GGATGCATAACAACAAGAACAATGCTAAGAAACCACCAACACCAACAACTACTCTC-T-A 1356
Query 955 ATCAGTGATCATATG 969
|||||||||||||||
Sbjct 1357 ATCAGTGATCATATG 1371
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47521503062
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5