BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926906
Length=1483
Score E
Sequences producing significant alignments: (Bits) Value
AT1G75260.1 | Symbols: | oxidoreductases, acting on NADH or NA... 1912 0.0
> AT1G75260.1 | Symbols: | oxidoreductases, acting on NADH or
NADPH | chr1:28247809-28249441 FORWARD LENGTH=1633
Length=1633
Score = 1912 bits (1035), Expect = 0.0
Identities = 1324/1460 (91%), Gaps = 34/1460 (2%)
Strand=Plus/Plus
Query 40 GCATCGCTCAGCCGTCAAAGCCAGAAA-AAAGGTCCAAGGTGTCACCGTCACTTTCTAAG 98
|||||||||||||||| ||| |||||| ||| | |||||| ||| ||||||||||||| |
Sbjct 170 GCATCGCTCAGCCGTCGAAGTCAGAAACAAA-GCCCAAGGCGTCTCCGTCACTTTCTAGG 228
Query 99 AGTAGAAGCAATGTTGCGGCCCTAGCAGCTTCTTCACCCGCGTCTCAATTGCCTTCTAGT 158
|||||||| |||||||| |||||||| |||||||| |||||||||||||||||||| |
Sbjct 229 AGTAGAAGTAATGTTGCAGCCCTAGCTGCTTCTTCGTCCGCGTCTCAATTGCCTTCT-CT 287
Query 159 -GGCGCAGCCACGCCAACCCGGCTGGTGAAACAGACTAACCAACAATCTGCTTCTCCATC 217
|| |||||||||||||| || |||| ||||||||||||||||||||||| |||||||||
Sbjct 288 CGGTGCAGCCACGCCAACTCGCCTGGCGAAACAGACTAACCAACAATCTGGTTCTCCATC 347
Query 218 AAAGAAACTGGATTCTCTGAGGATTGAGGAACAAAAGGTGACGACGAAAGAGAAGCCACA 277
|||||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||
Sbjct 348 AAAGAAACTGGATTCTCTGAGGATGGAGGAACAAAAGGTGGCGACAAAAGAGAAGCCACC 407
Query 278 GGGAGAAACT-AAAAATGTAGCTGGCGAGAATATCAATCCGGTAAAAGAGAAACCACCGA 336
|||||||||| ||||| |||||| |||||||||| ||| |||||||||||||| ||||
Sbjct 408 GGGAGAAACTGAAAAA-ATAGCTGAAGAGAATATCAGTCCTGTAAAAGAGAAACCTCCGA 466
Query 337 TT---GCTCGTCTAGAAGAGCATTTAGAACGA-AAAGAAACAGAGGCAGTTCAGGAACAG 392
|| ||||||| ||||||||||||||||| | ||||||||||||||||| || ||||||
Sbjct 467 TTGGAGCTCGTCCAGAAGAGCATTTAGAAC-AGAAAGAAACAGAGGCAGTGCAAGAACAG 525
Query 393 AGGAAGAAGACAGAAGCAGAGAGACTTGTGATGCAAGAAAATAAGAAAGTCCTTCCTGAA 452
||| ||| || ||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 526 GGGAGGAATACTGAAGCAGCGAGACTTGTGGTGCAAGAAAATAAGAAAGTCCTTCCTGAA 585
Query 453 GGCAATGGGGAGAAGTCAGCATCAGAT-ATGGGACAACAGAAGAGAAAAGAAATCGAGAA 511
|||| |||| ||||||||||| || || | |||||||||||||| | |||||||||||||
Sbjct 586 GGCAGTGGGAAGAAGTCAGCAGCAAATCA-GGGACAACAGAAGATAGAAGAAATCGAGAA 644
Query 512 ACTTGTGCTACAAGAAAGGAAGAAAGTTCTTCATGAAGGCAGTGGAGAGAAGTCGGAAAC 571
| ||| | |||||||||||||||||||||||||||| | | ||| | |||||| ||| |
Sbjct 645 AATTGCGTTACAAGAAAGGAAGAAAGTTCTTCATGACGACGGTGTACAGAAGTTAGAAGC 704
Query 572 AGATCAGGGACAACAGAAGAGCAAAGAAATC-GAGAAACTTGCATCACAAGAAACGAAGA 630
||||||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||
Sbjct 705 AGATCAGGGACAACAGAAGAGCAAAGAAA-CTGAGAAACTTGCATTACAAGAAACGAAGA 763
Query 631 GACCGCTTCAGGTGGTAGGCAGAGAAGATACAACGCGAAGCAAAACCACACGACATATTG 690
|| | ||||||| |||||| ||||||||| |||||||||||||||||||||||||||| |
Sbjct 764 GATCACTTCAGGCGGTAGGTAGAGAAGATGCAACGCGAAGCAAAACCACACGACATATGG 823
Query 691 CAGCAGCATCAGAAACCACGAGAGGACCGAGAGATCTACCGGAGAAAAAGACAGAAACGC 750
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 824 CAGCAGCATCAGAAACCACGAGAGGACCGAGAGATCTACCGGAGAAAAAGACAGAAACGC 883
Query 751 AAAACAGAACAAAGATTCAC-ACCGATGACAATCATCAGAAACCCAAAGGCGCATTAACG 809
||||||||||| |||||| | ||||||||||||||||||||| |||||||||||||||||
Sbjct 884 AAAACAGAACAGAGATTC-CTACCGATGACAATCATCAGAAAACCAAAGGCGCATTAACG 942
Query 810 AGTAATCTTGGAAATCCGAGAGTTACGACTGGACAGGGATCATCATCTTCAATGAGCAGA 869
|||||||||||||||||||||||||||| | || | |||||||| | | |||||||||||
Sbjct 943 AGTAATCTTGGAAATCCGAGAGTTACGAATAGAGAAGGATCATC-T-T-CAATGAGCAGA 999
Query 870 AAGATCAAAGAAGACATCAGAGATGGAATCAGTAAGCTTACTTGGGGAAAAGGCAACGGC 929
||||| |||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 1000 AAGATTAAAGAAGACATCAGAGATGGAATCAGTAAGCTAACTTGGGGAAAAAGCAACGGT 1059
Query 930 GATGAGAAATCCGTGAACGTCTATACTCTAACTGGAGAAAACAAAGGAGCCACAATGGGA 989
||||| ||||| |||| |||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1060 GATGATAAATCAGTGAGCGTCTACACTCTCACTGGAGAAAACAAAGGAGCCACAATGGGA 1119
Query 990 ATAGGTTCTGAGAAAGAGAAGAAAGACGGTGAGGTTCATATTCGCCGTGGCTACAGAAGT 1049
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1120 ATAGGTTCTGAGAAAGACAAGAAAGACGGTGAGGTTCATATTCGCCGTGGCTACAGAAGT 1179
Query 1050 AACCCAGACGAGAGCCCTAACACCACAACCATGGAAACCGAAAACCCTAAAGACGACGAA 1109
||||||||||||||| ||||||||||| ||| |||||||||||||||||||||||||||
Sbjct 1180 AACCCAGACGAGAGCTCTAACACCACAGCCACAGAAACCGAAAACCCTAAAGACGACGAA 1239
Query 1110 GCAGAGGAAGAAGCGAGGTTGAAGGCATACATAAACGGAAACACTCAAGGGATAAACAAT 1169
||||||||||||||||| || | |||||||||||||||||||||||||||||||||||||
Sbjct 1240 GCAGAGGAAGAAGCGAGTTTTACGGCATACATAAACGGAAACACTCAAGGGATAAACAAT 1299
Query 1170 TCAATTGTAGTCGAGAGTTCAGTAAGTGAGAATGATCCAGGAGTTCATATGAGTTTAAAA 1229
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 1300 TCAATTGTAGTCGAGAGTTCAGTAAGCGAGAATGATCCAGGAGTTCATATGAGTTTTAAG 1359
Query 1230 TTTGAAATATCAAAGAAGGAAGTTATAAATCCGCCAGAGAATGTGGAGGAGGAGAAGAAA 1289
|||||||||| ||||||||||||||| ||||||||||||||||||||||| | | ||||
Sbjct 1360 TTTGAAATATTGAAGAAGGAAGTTATATATCCGCCAGAGAATGTGGAGGAG-A-A-GAAA 1416
Query 1290 CCGGAGACGGTGACAG---CGACGAAG--AA----TGAGCCAAGAGTAAGGAGGAGATGC 1340
|||||||||||||| | ||| |||| || |||||| ||||||||||||||||||
Sbjct 1417 CCGGAGACGGTGACCGTAACGAAGAAGTTAAAGAATGAGCCGAGAGTAAGGAGGAGATGC 1476
Query 1341 TTGAGAGGGTTACTTGCGGAGTCGAGTGGGTCGGATCCGGATAATCCCTTGAAGCCACGG 1400
||||||||||||||||| |||||||||| |||||| || |||||||||||||||||||||
Sbjct 1477 TTGAGAGGGTTACTTGCAGAGTCGAGTGAGTCGGAGCCAGATAATCCCTTGAAGCCACGG 1536
Query 1401 AGACATGGTTGCCGGTTTACTTGTAAAGACAAAGATATCGAGAAAACTTCAAAATATATG 1460
||||||||||||||||||||||||||||| |||||||| ||||| |||| ||||| |||
Sbjct 1537 AGACATGGTTGCCGGTTTACTTGTAAAGATAAAGATATAGAGAACACTTAAAAATC-ATG 1595
Query 1461 TAAATTTTATGAAATTCTAT 1480
|||||| ||||||||| |||
Sbjct 1596 TAAATTGTATGAAATT-TAT 1614
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73142194065
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5