BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg926907

Length=739
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G75261.1 | Symbols:  | Pseudogene of AT4G39230; isoflavone r...   479    2e-134
  AT1G75280.1 | Symbols:  | NmrA-like negative transcriptional re...   102    4e-21 


> AT1G75261.1 | Symbols:  | Pseudogene of AT4G39230; isoflavone 
reductase, putative | chr1:28249567-28250016 FORWARD LENGTH=364
Length=364

 Score =  479 bits (259),  Expect = 2e-134
 Identities = 331/363 (91%), Gaps = 15/363 (4%)
 Strand=Plus/Plus

Query  357  AACAAAGAAGAAGACATTGCTGCATACACCATGAGAGCTATTGATGATCCGAGAACTCTC  416
            ||||||||||||||||||||||||||||||||||||||     ||  |  ||||||||||
Sbjct  13   AACAAAGAAGAAGACATTGCTGCATACACCATGAGAGC----CAT--T--GAGAACTCTC  64

Query  417  AACAAGACTCTCTACACCAATCCTCCAAAGAACATTGTTTCGCACAACGATATCGTCGCA  476
            |||||||||||||||| |||||||||| |||||| ||||||||| ||||| ||| ||| |
Sbjct  65   AACAAGACTCTCTACATCAATCCTCCAGAGAACACTGTTTCGCAGAACGACATCATCGAA  124

Query  477  TTGTGGGAGAGCAAGATTGGTAAAACTCTGAAGAAGACTTACGTTTCAGAGGA-ACAACT  535
            ||||||||||||||| ||||||||| |||| ||||||||||||||||| |||| | ||||
Sbjct  125  TTGTGGGAGAGCAAGGTTGGTAAAAATCTGGAGAAGACTTACGTTTCATAGGAGA-AACT  183

Query  536  TCTCAAGAAAATCCCAGAGTCTCCACATCCACTTGATCTTCTGTTGGCTTTGAATCATGC  595
            ||||||||||||  | ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  184  TCTCAAGAAAAT--C-GAGTCTCCACATCCACTTGATCTTCTGTTGGCTTTAAATCATGC  240

Query  596  CATATTTT-TGAAAGGAGATCAAACCTATTTTACAATAGAGCCTTCCTTTGGAGTGGAAG  654
            ||| |||| |||||||||||||||||||||||||| ||||||||| ||||| ||||||||
Sbjct  241  CAT-TTTTGTGAAAGGAGATCAAACCTATTTTACAGTAGAGCCTTACTTTGAAGTGGAAG  299

Query  655  CTTCTCAGCTTTATCCAGATATCAAGTACACAAGCGTCGATGAGTATCTCAGCCAGTTTG  714
            |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct  300  CTTCTCAGCTTTATCCAGATATCAAGTACACAAGCGTCGATGAGTAACTCAGCCAGTTTG  359

Query  715  TCT  717
            |||
Sbjct  360  TCT  362


> AT1G75280.1 | Symbols:  | NmrA-like negative transcriptional 
regulator family protein | chr1:28251960-28253619 FORWARD LENGTH=1267
Length=1267

 Score =  102 bits (55),  Expect = 4e-21
 Identities = 91/108 (84%), Gaps = 4/108 (4%)
 Strand=Plus/Plus

Query  70   TGGTGATCGGAGGAACTGGTTACATCGGAAAATTTATCGTAGAAG-GTAGCGCCAAATCC  128
            |||||||||||||||||||||||||||| |||||  | ||||||| | ||||||||| | 
Sbjct  96   TGGTGATCGGAGGAACTGGTTACATCGGGAAATTCCTAGTAGAAGCG-AGCGCCAAAGCT  154

Query  129  GGCCAC-CAAACATTCGCCCTCGTAAGAGAAGCCTCGCTTTCCGATCC  175
            |||||| | | ||||||| ||||| ||||||||  | || ||||||||
Sbjct  155  GGCCACTCCA-CATTCGCTCTCGTTAGAGAAGCAACTCTATCCGATCC  201



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 35867180958


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5