BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926914
Length=530
Score E
Sequences producing significant alignments: (Bits) Value
AT3G05270.1 | Symbols: | Plant protein of unknown function (DU... 267 1e-70
> AT3G05270.1 | Symbols: | Plant protein of unknown function (DUF869)
| chr3:1500803-1503320 REVERSE LENGTH=1954
Length=1954
Score = 267 bits (144), Expect = 1e-70
Identities = 230/266 (86%), Gaps = 27/266 (10%)
Strand=Plus/Plus
Query 290 AAAAGTAGAGATGGTAGAGGTAGAGAAATTGC-ATGTGGAGATGGGCTTTGAATGGATCC 348
|||||||||||||||||||||||||||| | | || ||||||| ||||||||| ||||||
Sbjct 1186 AAAAGTAGAGATGGTAGAGGTAGAGAAACTACAAT-TGGAGAT-GGCTTTGAACGGATCC 1243
Query 349 AAAG-GC--A--GA-G---T-C-G-GT----TAAAGGAGATAGAAGGGAAGTTATCTGAG 392
|||| || | || | | | | || ||||||||||||| ||||||||||| |||
Sbjct 1244 AAAGAGCAGATCGAGGCATTGCAGAGTCGACTAAAGGAGATAGAGGGGAAGTTATCGGAG 1303
Query 393 ATGAAAAAACTAGAAGCAGAGAACCAGGAACTAGAGTTGTTGGTGGGTGAATCAGGAAAG 452
||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1304 ATGAAGAAACTAGAAGCAGAGAACCAGGAACTAGAGTTGTTGTTGGGTGAATCAGGAAAG 1363
Query 453 CAAATTCAGGATCTTCAAAGACAGTTAAACAAAGCACAAGT----C----AGAACTAGAG 504
||||| |||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 1364 CAAATGGAGGATCTTCAAAGACAGTTAAACAAAGCACAAGTGAATCTGTCAGAACTAGAG 1423
Query 505 ACTAGAAGAGCAGAGAAGCTGGAACT 530
||||||||||||||||||||||||||
Sbjct 1424 ACTAGAAGAGCAGAGAAGCTGGAACT 1449
Score = 122 bits (66), Expect = 2e-27
Identities = 76/81 (94%), Gaps = 0/81 (0%)
Strand=Plus/Plus
Query 54 GCTGCGGCTTTGAAGCAACAGCTTGATGCTTCTACAAGCAAGGTTTCGGCCCTTGAGGAT 113
||||||||| |||||||||||||||||||||||||||| ||||||||||| || ||||||
Sbjct 407 GCTGCGGCTCTGAAGCAACAGCTTGATGCTTCTACAAGTAAGGTTTCGGCTCTCGAGGAT 466
Query 114 CGAAACAGTCATCTTGATAGT 134
||||| |||||||||||||||
Sbjct 467 CGAAATAGTCATCTTGATAGT 487
Score = 121 bits (65), Expect = 9e-27
Identities = 69/71 (97%), Gaps = 0/71 (0%)
Strand=Plus/Plus
Query 144 GAGCTCCAAGCTAGACAAGGCGTTACTACTGCTTCGGTCCACGAAGACCTTTACCCGAAA 203
||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 617 GAGCTCCAAGCTAGACAAGACGTTACTACTTCTTCGGTCCACGAAGACCTTTACCCGAAA 676
Query 204 CTTGAGGCTTT 214
|||||||||||
Sbjct 677 CTTGAGGCTTT 687
Score = 84.2 bits (45), Expect = 1e-15
Identities = 55/60 (92%), Gaps = 0/60 (0%)
Strand=Plus/Plus
Query 211 CTTTTAGTGATAATGAAATGCAGAGTCCCTCTGAGAAGACTGTTGGGAAAACTTCAATGG 270
|||||||||||||||||||||||||||| || ||||||| | ||||||||| ||||||||
Sbjct 939 CTTTTAGTGATAATGAAATGCAGAGTCCATCAGAGAAGATTATTGGGAAAAGTTCAATGG 998
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25368244235
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5