BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926921
Length=203
Score E
Sequences producing significant alignments: (Bits) Value
AT1G75388.1 | Symbols: CPuORF5 | conserved peptide upstream ope... 318 1e-86
AT1G75390.1 | Symbols: AtbZIP44, bZIP44 | basic leucine-zipper ... 318 1e-86
> AT1G75388.1 | Symbols: CPuORF5 | conserved peptide upstream open
reading frame 5 | chr1:28291698-28293008 FORWARD LENGTH=1311
Length=1311
Score = 318 bits (172), Expect = 1e-86
Identities = 176/178 (99%), Gaps = 0/178 (0%)
Strand=Plus/Plus
Query 26 AACTCTTGTGGATCTTGATGTTCAAACATTCATGTCTCCGGTGATTAGTGAAATCCTTAG 85
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 227 AACTCTTGTGGATCTTGATGTTCAAACATTCATGTCTCCGGTGATTAGTGAAATCCTTAG 286
Query 86 ATCTGGTTTAACTATAGACTCGTCTCTTAGACGCAGGACCCATCTAGTTCAATCTTTCTC 145
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 287 ATCTGGTTTAACTATAGACTCGTCTCTTAGACGCAGGACCCATCTTGTTCAATCTTTCTC 346
Query 146 CGTCGTCTTTCTCTACTGGTTCTATGTTTTCTCATAAATCATCTCTCCTTTAGCCCTT 203
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 347 CGTCGTCTTTCTCTACTGGTTCTATGTTTTCTCATAAATCAGCTCTCCTTTAGCCCTT 404
> AT1G75390.1 | Symbols: AtbZIP44, bZIP44 | basic leucine-zipper
44 | chr1:28291698-28293008 FORWARD LENGTH=1311
Length=1311
Score = 318 bits (172), Expect = 1e-86
Identities = 176/178 (99%), Gaps = 0/178 (0%)
Strand=Plus/Plus
Query 26 AACTCTTGTGGATCTTGATGTTCAAACATTCATGTCTCCGGTGATTAGTGAAATCCTTAG 85
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 227 AACTCTTGTGGATCTTGATGTTCAAACATTCATGTCTCCGGTGATTAGTGAAATCCTTAG 286
Query 86 ATCTGGTTTAACTATAGACTCGTCTCTTAGACGCAGGACCCATCTAGTTCAATCTTTCTC 145
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 287 ATCTGGTTTAACTATAGACTCGTCTCTTAGACGCAGGACCCATCTTGTTCAATCTTTCTC 346
Query 146 CGTCGTCTTTCTCTACTGGTTCTATGTTTTCTCATAAATCATCTCTCCTTTAGCCCTT 203
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 347 CGTCGTCTTTCTCTACTGGTTCTATGTTTTCTCATAAATCAGCTCTCCTTTAGCCCTT 404
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 9054243180
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5