BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926922
Length=563
Score E
Sequences producing significant alignments: (Bits) Value
AT1G75388.1 | Symbols: CPuORF5 | conserved peptide upstream ope... 867 0.0
AT1G75390.1 | Symbols: AtbZIP44, bZIP44 | basic leucine-zipper ... 867 0.0
> AT1G75388.1 | Symbols: CPuORF5 | conserved peptide upstream open
reading frame 5 | chr1:28291698-28293008 FORWARD LENGTH=1311
Length=1311
Score = 867 bits (469), Expect = 0.0
Identities = 530/559 (95%), Gaps = 6/559 (1%)
Strand=Plus/Plus
Query 7 TGTGTGTTTTTAAATATGAATAATAAAACTGAAATGGGATCGTCGACAAGTGGTAATTGC 66
|||||| |||| ||||||||||||||||||||||||||||| || |||||||| ||||||
Sbjct 514 TGTGTG-TTTT-AATATGAATAATAAAACTGAAATGGGATCTTCCACAAGTGGAAATTGC 571
Query 67 TCGTCGGTTTCAACCACCGGTTTAGCTAACTCCGGTTCGGAATCTGATCTCCGGCAACGA 126
||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 572 TCGTCGGTTTCAACCACTGGTTTAGCTAACTCCGGTTCAGAATCTGATCTCCGGCAACGT 631
Query 127 GATCTAATCGACGAGCGGAAGCGAAAGCGGAAACAGTCGAACAGAGAATCTGCGAGGAGG 186
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 632 GATCTAATCGACGAGCGGAAGAGAAAGAGGAAACAGTCGAACAGAGAATCTGCGAGGAGG 691
Query 187 TCGAGGATGAGGAAGCAGAAGCATTTGGATGATCTCACTGCTCAGGTGACACATCTACGT 246
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 692 TCGAGGATGAGGAAGCAGAAGCATTTGGATGATCTCACTGCTCAGGTGACTCATCTACGT 751
Query 247 AAAGAAAACGCTCAGATCGTCGCCGGAATCGCCGTCACGACGCAGCACTACGTCACAATC 306
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 752 AAAGAAAACGCTCAGATCGTCGCCGGAATCGCCGTCACGACGCAGCACTACGTCACTATC 811
Query 307 GAGACGGAAAACGACATTCTCAGAGCTCAGGTTCTTGAGCTCAACCACCGTCTCCAATCT 366
||| |||| ||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 812 GAGGCGGAGAACGACATTCTCAGAGCTCAGGTTCTTGAACTTAACCACCGTCTCCAATCT 871
Query 367 CTTAACGAGATCGTCGATTTCGTGGAATCATCGTCTTCAGGATTCGGTATGGAGACCGGT 426
|||||||||||||| |||||||| ||||| || |||||||||||||||||||||||||||
Sbjct 872 CTTAACGAGATCGTTGATTTCGTCGAATCTTCTTCTTCAGGATTCGGTATGGAGACCGGT 931
Query 427 CAAGGAATGAT-CGACGGTGGATT-TTACGACGGAGTGATGAATCCTATGAATTTAGGGT 484
|| ||| | || |||||||||||| || |||||| |||||||||||||||||| ||||||
Sbjct 932 CAGGGATT-ATTCGACGGTGGATTATT-CGACGGCGTGATGAATCCTATGAATCTAGGGT 989
Query 485 TTTATAATCAACCAATCATGGCTTCTGCTTCTACTGCTGGTGATGTTTTCAACTGTTAGA 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 990 TTTATAATCAACCAATCATGGCTTCTGCTTCTACTGCTGGTGATGTTTTCAACTGTTAGA 1049
Query 545 AAATTTCACATCATTATCA 563
||| |||||||||||||||
Sbjct 1050 AAACTTCACATCATTATCA 1068
> AT1G75390.1 | Symbols: AtbZIP44, bZIP44 | basic leucine-zipper
44 | chr1:28291698-28293008 FORWARD LENGTH=1311
Length=1311
Score = 867 bits (469), Expect = 0.0
Identities = 530/559 (95%), Gaps = 6/559 (1%)
Strand=Plus/Plus
Query 7 TGTGTGTTTTTAAATATGAATAATAAAACTGAAATGGGATCGTCGACAAGTGGTAATTGC 66
|||||| |||| ||||||||||||||||||||||||||||| || |||||||| ||||||
Sbjct 514 TGTGTG-TTTT-AATATGAATAATAAAACTGAAATGGGATCTTCCACAAGTGGAAATTGC 571
Query 67 TCGTCGGTTTCAACCACCGGTTTAGCTAACTCCGGTTCGGAATCTGATCTCCGGCAACGA 126
||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 572 TCGTCGGTTTCAACCACTGGTTTAGCTAACTCCGGTTCAGAATCTGATCTCCGGCAACGT 631
Query 127 GATCTAATCGACGAGCGGAAGCGAAAGCGGAAACAGTCGAACAGAGAATCTGCGAGGAGG 186
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 632 GATCTAATCGACGAGCGGAAGAGAAAGAGGAAACAGTCGAACAGAGAATCTGCGAGGAGG 691
Query 187 TCGAGGATGAGGAAGCAGAAGCATTTGGATGATCTCACTGCTCAGGTGACACATCTACGT 246
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 692 TCGAGGATGAGGAAGCAGAAGCATTTGGATGATCTCACTGCTCAGGTGACTCATCTACGT 751
Query 247 AAAGAAAACGCTCAGATCGTCGCCGGAATCGCCGTCACGACGCAGCACTACGTCACAATC 306
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 752 AAAGAAAACGCTCAGATCGTCGCCGGAATCGCCGTCACGACGCAGCACTACGTCACTATC 811
Query 307 GAGACGGAAAACGACATTCTCAGAGCTCAGGTTCTTGAGCTCAACCACCGTCTCCAATCT 366
||| |||| ||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 812 GAGGCGGAGAACGACATTCTCAGAGCTCAGGTTCTTGAACTTAACCACCGTCTCCAATCT 871
Query 367 CTTAACGAGATCGTCGATTTCGTGGAATCATCGTCTTCAGGATTCGGTATGGAGACCGGT 426
|||||||||||||| |||||||| ||||| || |||||||||||||||||||||||||||
Sbjct 872 CTTAACGAGATCGTTGATTTCGTCGAATCTTCTTCTTCAGGATTCGGTATGGAGACCGGT 931
Query 427 CAAGGAATGAT-CGACGGTGGATT-TTACGACGGAGTGATGAATCCTATGAATTTAGGGT 484
|| ||| | || |||||||||||| || |||||| |||||||||||||||||| ||||||
Sbjct 932 CAGGGATT-ATTCGACGGTGGATTATT-CGACGGCGTGATGAATCCTATGAATCTAGGGT 989
Query 485 TTTATAATCAACCAATCATGGCTTCTGCTTCTACTGCTGGTGATGTTTTCAACTGTTAGA 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 990 TTTATAATCAACCAATCATGGCTTCTGCTTCTACTGCTGGTGATGTTTTCAACTGTTAGA 1049
Query 545 AAATTTCACATCATTATCA 563
||| |||||||||||||||
Sbjct 1050 AAACTTCACATCATTATCA 1068
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27025971086
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5