BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926923
Length=1408
Score E
Sequences producing significant alignments: (Bits) Value
AT1G75400.1 | Symbols: | RING/U-box superfamily protein | chr1... 2230 0.0
AT1G19680.1 | Symbols: | RING/U-box superfamily protein | chr1... 568 7e-161
> AT1G75400.1 | Symbols: | RING/U-box superfamily protein | chr1:28296919-28299686
FORWARD LENGTH=1948
Length=1948
Score = 2230 bits (1207), Expect = 0.0
Identities = 1329/1389 (96%), Gaps = 3/1389 (0%)
Strand=Plus/Plus
Query 21 ATGGGTTCAGTTTGTTGTGTAGCTATGAAAGACAGAAAGGTTCCTCCTAGTGGTGGACCT 80
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 359 ATGGGTTCAGTTTGTTGTGTAGCTGTGAAAGACAGAAAGGTTCCTCCTAGTGGTGGACCT 418
Query 81 GCGAGTGCGTCTGTCCATCGGAATTCAGCATGTTCGCCACAATGGAGTTTTCGACGTGAC 140
|||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 GCGAGTTCATCTGTTCATCGGAATTCAGCATGTTCGCCACAATGGAGTTTTCGACGTGAT 478
Query 141 AATAGGAGGCGAGTGGCTGATGAGATTGAGGGTTCACCTTATTACAGTCCATATGTTGCA 200
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 479 AATAGGAGGCGAGTGGCTGATGAGATTGAGGGTTCACCTTATTACAGTCCTTATGTTGCG 538
Query 201 AGTAGAGGTATTAGTATGGATAAGATGTCATTAGGCTCTGAAATAGGAACTTTATCTGAG 260
||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 539 AGTAGAGGTATTAGTATGGATAAGATGTCATTAGGCTCTGAGAGAGGAACTTTATCTGAA 598
Query 261 GGAGGAACCCCTCCTGATGGGCATTTAGGGACTCCTGCTTCTCATAAATCAGCCACTCCA 320
|||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||
Sbjct 599 GGAGGAACCCCTCCTGATGGACATTTAGGGACTCCTGCTTCTCAGAAATCAGCAACTCCG 658
Query 321 GAAATGAGCACAAATTCTATGGTTCCACCTTCTTCAGGTTCATCCTTGGCAAGCAGTGAT 380
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 GAAATGAGCACCAATTCCATGGTTCCACCTTCTTCAGGTTCATCCTTGGCAAGCAGTGAT 718
Query 381 CTCATTGAGGTGAAGAACTTAATTGACTCACCTGGAAATGTCCCGTCAGCTTTGCCGAAG 440
||||||||||||||||||||| ||||||||||||||| |||||| |||||| |||||
Sbjct 719 CTCATTGAGGTGAAGAACTTAGTTGACTCACCTGGAATTGTCCCTTCAGCTCAATCGAAG 778
Query 441 CCTTTGTTCTCCACACCTTCTCTTCCCAATCCAGTCGGTGATCTTTCATCGGCTCACACG 500
|||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 779 CCTTTGTTCTCCACGCCTTCTCTTCCCAATCCAGTTAGTGATCTTTCATCGGCTCACACG 838
Query 501 CGTTTGCTTCCTCCTAAATCCACACCATCAAGACGGGCTCGGCGTTCACCTGGGCATCAG 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 CGTTTGCTTCCTCCTAAATCCACACCATCAAGACGGGCTCGGCGTTCACCTGGGCATCAG 898
Query 561 TTGTTTAGGCAGGTTTCTGATAGTCAAATCTTAGGACTGAAATCCCCAAATAATAATTAC 620
||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 899 TTGTTTAGGCAGGTTTCTGATAGTCAAATTTTAGGACTGAAATCCCCAATTAATAATTAC 958
Query 621 TCGATCTCAGAAGGAAGGTCGTCCTTTGTGCTTTCAACCTGTAGCAATGACTTCGCCACT 680
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 959 TCAATCTCAGAAGGAAGGTCGTCCTTTGTGCTTTCGACCTGTAGCAATGACTTCGCCACT 1018
Query 681 GGATCCCAGTACGCATCTTCTGAAGGTGGCTGGTCTATGAACACTTTTTCTGAGCTCGTG 740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 GGATCCCAGTACGCATCTTCTGAAGGTGGCTGGTCTATGAACACTTTTTCTGAGCTCGTG 1078
Query 741 GCGTATTCTCAAAGGGAGAGATGGTCCTTTGATAGCGAACACTTAGGTTCTGGCAGACGG 800
|| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 1079 GCATATTCTCAAAGGGATAGATGGTCCTTTGATAGCGAACACTTGGGTTCTGGCAGACGG 1138
Query 801 AAACTAAGTGGTGGTAGCAGCAGATTCTCCTTCTCCCCTTCCATTGTTGATCAGCAGATT 860
||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| ||
Sbjct 1139 AAACTAAGTGGTGGTAGCAGCAGATTCTCATTCTCCCCTTCCGTTGTTGATCAGCAGGTT 1198
Query 861 TGTGGAGCTTGCTCAAAGTTACTAACCGAGAGGTCTTCTATTGCCAATTTCGAGCTCCCA 920
||||||||||| |||||||| |||||||||||||||||||| |||| ||| |||||||||
Sbjct 1199 TGTGGAGCTTGTTCAAAGTTGCTAACCGAGAGGTCTTCTATAGCCACTTTTGAGCTCCCA 1258
Query 921 ATCGCTGCTGTTCTTGCGTGTGGCCATGTTTACCACGCAGAGTGCTTAGAGACCATGACT 980
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1259 ATCGCTGCTGTTCTTGCCTGTGGTCATGTTTACCACGCAGAGTGCTTAGAGACCATGACT 1318
Query 981 ACCGAGATAGAGAAGTACGATCCTGCTTGTCCCATATGCACGATTGGGGAGAAACGGGTA 1040
|| || ||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 1319 ACTGATATAGAGAAGTATGATCCTGCTTGTCCCATATGCACAATTGGGGAGAAACGGGTT 1378
Query 1041 GCGAAAATAACAAGGAAAGCCCTTAAAGCGGAGGCGGAAGCAAAGGCAAAGCAGTACAAA 1100
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1379 GCGAAAATAACAAGGAAAGCCCTAAAAGCGGAGGCGGAAGCAAAGGCAAAGCAGTACAAA 1438
Query 1101 AGATGTAAAAACCGTGTGGTAGATAGTTATGGTGAGAGTGAATGCGATGAGTTTGTGTTC 1160
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 1439 AGATGTAAAAACCGTGTGGTAGATAGTTACGGTGAGAGTGAATGCGATGAGTTTGTATTC 1498
Query 1161 CAGAAAATGGAGAAACGAGAAGGCAAAGCTCTTAAGCTGGAAGCTAGTTGCAGTAGCAAG 1220
|||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1499 CAGAAAATGGGGAAACGAGAAGGCAAAGCTCTCAAGCTGGAAGCTAGTTGCAGTAGCAAG 1558
Query 1221 AGCTCGTCTAATAAGTCATTCTTAAAATGGCACTTTGCTTCTATCAGCTCCAAGTGGAAT 1280
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1559 AGCTCGTCTAATAAGTCATTCTTGAAATGGCACTTTGCTTCTATCAGCTCCAAGTGGAAT 1618
Query 1281 AAACCCTCGTCCAAAGACTCTGCATTGAAGAAGGGGTTCTGGTCTAGACATCGTAATAAC 1340
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 1619 AAACCCTCGTCCAAAGACTCTGCATTGAAGAAGGGATTCTGGTCTAGACATCGAAATAAC 1678
Query 1341 CGGTCTTCTTCAAGCATAGAGGGACTTAATCAGACATCTCAGCTATGATGAAACCCC-CC 1399
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 1679 CGGTCTTCTTCAAGCATAGAGGGACTTAATCAGACATCTCCGCTATGATGAAACCCCTCC 1738
Query 1400 TGATCTGGA 1408
|||||||
Sbjct 1739 --ATCTGGA 1745
> AT1G19680.1 | Symbols: | RING/U-box superfamily protein | chr1:6805457-6807862
FORWARD LENGTH=1805
Length=1805
Score = 568 bits (307), Expect = 7e-161
Identities = 706/888 (80%), Gaps = 69/888 (8%)
Strand=Plus/Plus
Query 479 TGATCTTTCATCGGCTCACACGCGTTTGCTTCCTCCTAAATCCACACCATCAAGACGGGC 538
||||||| | || |||||||| | || |||||||| | ||| || || || ||||| ||
Sbjct 728 TGATCTTCCTTCAGCTCACACACATTCACTTCCTCCCAGATCAACTCCGTCTAGACGTGC 787
Query 539 TCG-GCGTTCACCTGGGCATCAGTTGTTTAGGCAGGTTTCTGATAGTCAAATCTTAGG-A 596
||| | ||||||||||||| ||||||||||||||||||||||||||||||| ||| || |
Sbjct 788 TCGAG-GTTCACCTGGGCAGCAGTTGTTTAGGCAGGTTTCTGATAGTCAAA-CTTTGGGA 845
Query 597 CTGAAATC-CCCAAATAATAATTACTCGATC-TCAGAAGGAAGGTCGTCCTTTGTGCTTT 654
||||||| ||||| |||| | |||| | | || |||||||||||||||||||||||||
Sbjct 846 TTGAAATCTCCCAA-TAAT--T-ACTCAA-CATCTGAAGGAAGGTCGTCCTTTGTGCTTT 900
Query 655 CAACCTGTAGCAATGACT-TCGCCACTGGATCCCAGTACGCATCTTCTGAAGGTGGCTGG 713
| |||||||| |||||| | |||||||| ||||| | || ||||||||||||||||||
Sbjct 901 CGACCTGTAGTAATGACACT-GCCACTGGGTCCCATTTTGCTTCTTCTGAAGGTGGCTGG 959
Query 714 TCTATGAACACTTTTTCTGAGCTCGTGGCGT-ATTCTCAAAGGGAGAGATGGTCCTTTGA 772
|| || ||| | |||| |||||||||||| | | |||||||||||||||||||| |||||
Sbjct 960 TCCATAAACGCCTTTTGTGAGCTCGTGGC-TCAGTCTCAAAGGGAGAGATGGTCTTTTGA 1018
Query 773 TAGCGAACACTTAGGTTCTGG-CAGACGGAA-ACTAAGTGG-TG--GTAGCAGCAGATTC 827
|| || ||||||||||| || | |||| || ||||||||| || |||| |||||||||
Sbjct 1019 TAATGAGCACTTAGGTTCCGGAC-GACG-AAGACTAAGTGGGTGTAGTAGTAGCAGATTC 1076
Query 828 TCCTTCTCCCCTTCCATTGTTGATCAGCAGATTTGTGGAGC-TTGCTCAAAG-TTACTAA 885
|| | ||||||||| | ||||||||||||| |||||| || |||||||||| || |||
Sbjct 1077 TCATGCTCCCCTTC--T-GTTGATCAGCAGACTTGTGG-GCGTTGCTCAAAGCTTT-TAA 1131
Query 886 CCGAGAGGTCTTCTA-TTGCCAA-TTTCGAGCTCCCAAT-CGCTGCTGTTCTTGCGTGTG 942
| || |||||| | | |||||| ||| || || ||||| | |||||||||| ||||| |
Sbjct 1132 CTGAAAGGTCTCC-AGTTGCCAGGTTT-GACCTTCCAATTC-CTGCTGTTCTAGCGTGCG 1188
Query 943 GCCATGTTTACCACGCAG-AGTGCTTAGAGACCATGACTACCGAGATAGAGAAGTACGAT 1001
||||||||||||| || | | ||||||||||| ||||| | || | ||||||||| |||
Sbjct 1189 GCCATGTTTACCATGCGGCA-TGCTTAGAGACAATGACAAATGAAACAGAGAAGTATGAT 1247
Query 1002 CCTGCTTGTCCCATATGCACGATTGGGGAGAAACGGGT-AGCGAAAATAACAAGGAAAGC 1060
||| | |||||||||||||| | | ||| || ||| | | ||| || | ||||||||
Sbjct 1248 CCTACGTGTCCCATATGCAC-A--G---AGACACAGGTTA-CTAAATTATCGAGGAAAGC 1300
Query 1061 CCTTAAAGCGGAGGCGGAAGCAAAGGCAAAGCAGT-ACAAAAGATGTAAAAACCGTGTGG 1119
|| ||||| ||||| ||| ||||||| | ||| ||||||| ||||| ||||||||||
Sbjct 1301 TCTAAAAGCCGAGGCAGAATTGAAGGCAACG-AGTTACAAAAGGTGTAAGAACCGTGTGG 1359
Query 1120 TAGATAGTTATGGTGAG-AGTGAATGCGATGAGT-TTGTGTTCCAGAAAAT-GGAGAAAC 1176
|||||||||||| | | |||||||| || || | || |||||||||| | || |||||
Sbjct 1360 TAGATAGTTATG-TCCGCAGTGAATGTGAGGA-TCTTATGTTCCAGAATCTAGG-GAAAC 1416
Query 1177 GAGAAGGCAAAGCTCTTAAGCTGGAAGCTAGTT-GCAGTAGCAAGAG-CTCGTC-TAATA 1233
||||||| |||| ||| ||| |||| |||||| | | || ||| || ||| | | ||
Sbjct 1417 GAGAAGGAAAAGGTCTGAAGATGGATCCTAGTTCGAA-TACCAA-AGGCTCCACGTC-TA 1473
Query 1234 AGTCATTCTTA--AAATGGCACTTTGCTTCTATCAGCTCCAAGTGGAATAAACCCTCGTC 1291
|||| || ||| ||||||||||| | ||| ||||| ||||||||| |||| | |
Sbjct 1474 AGTC-TT-TTATGAAATGGCACTTCGGTTCCGTCAGCACCAAGTGGAGTAAA-----G-C 1525
Query 1292 CAAAGACTCTGCATTGAAGAAGGGGTTCTGGTCTAGACATCGTAATAA 1339
|| || ||| | | ||||||| | || ||||| |||||| |||||||
Sbjct 1526 CAGGGATTCTACCTCGAAGAAGAGCTTTTGGTCCAGACATAGTAATAA 1573
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69377153190
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5