BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg926932

Length=283
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G47610.1 | Symbols:  | Ribosomal protein L7Ae/L30e/S12e/Gadd...   267    5e-71
  AT3G62870.1 | Symbols:  | Ribosomal protein L7Ae/L30e/S12e/Gadd...   207    3e-53


> AT2G47610.1 | Symbols:  | Ribosomal protein L7Ae/L30e/S12e/Gadd45 
family protein | chr2:19529744-19531659 FORWARD LENGTH=1142
Length=1142

 Score =  267 bits (144),  Expect = 5e-71
 Identities = 170/182 (93%), Gaps = 3/182 (2%)
 Strand=Plus/Plus

Query  101  GGTTGTTCAGCAAAAGACTGCTGCTTGCTTGTGTTTGACCACTGTCAAGAACGAGGACAA  160
            ||||||||| || ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct  659  GGTTGTTCACCAGAAGACTGCTTCTTGCTTGTGTTTGACCACTGTCAAGAACGAGGACAA  718

Query  161  GCTAGAGTTCAGCAAATTCCTAGAGGCTATCAAGGCCAACTTCAATGACAAGTACAAGGA  220
            |||||||||||||||| |||| || |||||||||||||||||||||||||||||| ||||
Sbjct  719  GCTAGAGTTCAGCAAAATCCTGGAAGCTATCAAGGCCAACTTCAATGACAAGTACGAGGA  778

Query  221  GTACAGGAAGAAATGGAGAGGAGGCATAATGGGATCATATTAGTCTCAGGCGAAGACCAA  280
            |||||||||||||||| ||||||||||||||||||| ||  |||||||||| ||||||||
Sbjct  779  GTACAGGAAGAAATGGGGAGGAGGCATAATGGGATC-TA--AGTCTCAGGCAAAGACCAA  835

Query  281  GG  282
            ||
Sbjct  836  GG  837


> AT3G62870.1 | Symbols:  | Ribosomal protein L7Ae/L30e/S12e/Gadd45 
family protein | chr3:23242665-23244353 REVERSE LENGTH=1048
Length=1048

 Score =  207 bits (112),  Expect = 3e-53
 Identities = 159/181 (88%), Gaps = 5/181 (3%)
 Strand=Plus/Plus

Query  101  GGTTGTTCAGCAAAAGACTGCTGCTTG-CTTGTGTTTGACCACTGTCAAGAACGAGGACA  159
            ||| ||||| || ||||||||||| || |||||| |||||||||||||||||||||||||
Sbjct  626  GGTCGTTCACCAGAAGACTGCTGC-TGCCTTGTGCTTGACCACTGTCAAGAACGAGGACA  684

Query  160  AGCTAGAGTTCAGCAAATTCCTAGAGGCTATCAAGGCCAACTTCAATGACAAGTACAAGG  219
            |||| |||||||||||| |||| ||||| |||||||| |||||||| ||||||||| |||
Sbjct  685  AGCTTGAGTTCAGCAAAATCCTCGAGGCCATCAAGGCTAACTTCAACGACAAGTACGAGG  744

Query  220  AGTACAGGAAGAAATGGAGAGGAGGCATAATGGGATCATATTAGTCTCAGGCGAAGACCA  279
            ||||||||||||| ||| |||| ||||||||||||||  |  ||||||| || |||||||
Sbjct  745  AGTACAGGAAGAAGTGGGGAGGTGGCATAATGGGATCC-A--AGTCTCAAGCCAAGACCA  801

Query  280  A  280
            |
Sbjct  802  A  802



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13019346991


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5