BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926945
Length=506
Score E
Sequences producing significant alignments: (Bits) Value
AT1G75590.1 | Symbols: | SAUR-like auxin-responsive protein fa... 797 0.0
AT1G19840.1 | Symbols: | SAUR-like auxin-responsive protein fa... 412 1e-114
AT5G10990.1 | Symbols: | SAUR-like auxin-responsive protein fa... 350 1e-95
> AT1G75590.1 | Symbols: | SAUR-like auxin-responsive protein
family | chr1:28382896-28383768 REVERSE LENGTH=873
Length=873
Score = 797 bits (431), Expect = 0.0
Identities = 482/507 (95%), Gaps = 2/507 (0%)
Strand=Plus/Plus
Query 1 AAATCACTAAACCGGAAAAAATGGCTGGAGGTCTCGGAAAATGCAGCAAGATCCGTCACA 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 35 AAATCACTAAACCGGAAAAAATGGCTGGAGGTCTCGGGAAATGCAGCAAGATCCGTCACA 94
Query 61 TTGTGAGGCTGAGACAGATGCTTCGACGGTGGCGCGATCAAGCGAGGATGTCTTCTTCTT 120
|||||||||| || || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 95 TTGTGAGGCTAAGGCAAATGCTTCGACGGTGGCGCGATCAAGCGAGGATGTCTTCTTCTT 154
Query 121 TCAGCCGTCGTGTACCGTCGGATGTGCCGTCAGGACACGTGGCGATCTACGTAGGAAGCA 180
|||||||| |||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct 155 TCAGCCGTTGTGTACCGTCGGATGTACCGTCAGGACACGTGGCGGTCTACGTAGGAAGCA 214
Query 181 GTTGCAGGAGATTTGTGGTGCGCGCGACGTATCTGAACCATCCAATCCTACGGAATC-TG 239
|||| |||||||||||||||||||||||||||||||||||||| ||||| |||| | |
Sbjct 215 GTTGTAGGAGATTTGTGGTGCGCGCGACGTATCTGAACCATCCTGTCCTAAGGAACCTTC 274
Query 240 TTGGTTCAAGCTGAGGAAGAGTTCGGTTTCGTTAACCAAGGTCCGTTGGTTATCCCTTGT 299
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 275 TT-GTTCAAGCTGAGGAAGAGTTTGGTTTCGTTAACCAAGGTCCGTTGGTTATCCCTTGT 333
Query 300 GAAGAATCGGTTTTCGAGGAATCGATTCGGTTTATCTCCCGGTCTGATTCGACTCGGTCA 359
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 334 GAAGAATCGGTTTTCGAGGAATCGATTCGGTTTATATCCCGGTCTGATTCGACCCGGTCA 393
Query 360 AGACGGTTTACTTGTCCCGATGATTTTCAGAAGAACCGCCAGGTGGTGGGAATCAGAAGC 419
||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 394 AGACGGTTTACTTGTCCCGATGATTTTCAGAAGAATTGCCACGTGGTGGGAATCAGAAGC 453
Query 420 AAGATAGATCTATGGATCGAATCTCGACCGTTACTTCACGGCGTCACTGAAAAAGCCGTC 479
||| | |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 454 AAGCTTGATCTATGGATCGAATCTCGACCGTTACTTCACGGCGTTACTGAAAAAGCCGTT 513
Query 480 TGGTGATGTCACTTGACGGCGTTCGTA 506
|||||||||||||||||||||||||||
Sbjct 514 TGGTGATGTCACTTGACGGCGTTCGTA 540
> AT1G19840.1 | Symbols: | SAUR-like auxin-responsive protein
family | chr1:6872794-6873255 REVERSE LENGTH=462
Length=462
Score = 412 bits (223), Expect = 1e-114
Identities = 392/472 (83%), Gaps = 17/472 (4%)
Strand=Plus/Plus
Query 21 ATGGCTGGAGGTCTCGGAAAATGCAGCAAGATCCGTCACATTGTGAGGCTGAGACAGATG 80
||||| ||| |||| | |||||||||||||||||||||||||||||| || ||||| |||
Sbjct 1 ATGGCCGGAAGTCTTGTAAAATGCAGCAAGATCCGTCACATTGTGAGACTCAGACAAATG 60
Query 81 CTTCGACGGTGGCGCGATC-AAGCGAGGATGTCTTCTTCTTTCAGCCGTCGTGTACCGTC 139
|| || || ||||| | | ||||| || | | ||||| |||||||| ||||||||||
Sbjct 61 CTCCGGCGATGGCG-TAACAAAGCGCGG-T-T-ATCTTCGGTCAGCCGTTGTGTACCGTC 116
Query 140 GGATGTGCCGTCAGGACACGTGGCGA-TCTACGTAGGAAGCAGTTGCAGGAGATTTGTGG 198
|||||| || || ||||||||||| | | | || || ||| ||||||||||||||||||
Sbjct 117 GGATGTTCCATCTGGACACGTGGC-AGTTTGTGTGGGTAGCGGTTGCAGGAGATTTGTGG 175
Query 199 TGCGCGCGACGTATCTGAACCATCCAATCCTACGGAATCTGT-TGGTTCAAGCTGAGGAA 257
|||| ||| |||| ||||||||||| ||| || | ||||| | |||||||||||||||||
Sbjct 176 TGCGTGCGTCGTACCTGAACCATCCTATCATAAGCAATCT-TCTGGTTCAAGCTGAGGAA 234
Query 258 GAGTTCGGTTTCGTTAACCAAGGTCCGTTGGTTATCCCTTGTGAAGAATCGGTTTTCGAG 317
||||| ||||| | ||||||||| ||||||||||| ||||| |||||||||||||||||
Sbjct 235 GAGTTTGGTTTTGCTAACCAAGGACCGTTGGTTATTCCTTGCGAAGAATCGGTTTTCGAA 294
Query 318 GAATCGATTCGGTTTATCTCCCGGTCTGATTCGACTCGGTCAAGACGGTTTACTTGTCCC 377
||| |||| |||||||| |||||||||||||| ||||||| || ||||||||||||||
Sbjct 295 GAAGCGATCCGGTTTATATCCCGGTCTGATTCTTCTCGGTCTAGCCGGTTTACTTGTCCT 354
Query 378 GATGATTTTCAGAA--G-AACCGCCAGGTGGTGGGAATCAGAAGCAAGATAGATCT-ATG 433
|||||| ||||||| | ||| | ||| | | ||||| ||||||| ||||||| |||
Sbjct 355 GATGATCTTCAGAAATGTAACGG--AGG-GATCAAAATCAAAAGCAAGCTAGATCTGATG 411
Query 434 GATCGAATCTCGACCGTTACTTCACGGCGTCACTGAAAAAGCCGTCTGGTGA 485
|| |||||||||||||| ||||| |||||| |||| ||||| ||||||||
Sbjct 412 -ATTGAATCTCGACCGTTGCTTCATGGCGTCGCTGAGAAAGCTATCTGGTGA 462
> AT5G10990.1 | Symbols: | SAUR-like auxin-responsive protein
family | chr5:3476839-3477704 FORWARD LENGTH=866
Length=866
Score = 350 bits (189), Expect = 1e-95
Identities = 373/457 (82%), Gaps = 31/457 (7%)
Strand=Plus/Plus
Query 13 CGGAAAAAATGGCTGGAGGTCTCGGAAAATGCAGCAAGATCCGTCACATTGTGAGGCTGA 72
|||||||||||||||||||| |||||||||| ||||||||||| |||||||||| ||| |
Sbjct 38 CGGAAAAAATGGCTGGAGGTATCGGAAAATGTAGCAAGATCCGACACATTGTGAAGCTAA 97
Query 73 GACAGATGCTTCGACGGTGGCGCGATCAA-GCGAGGATGTCTTCTTCTTTCAGCCG-TCG 130
| || |||||||| | ||||| | ||| ||| | ||| || ||| |||| || ||
Sbjct 98 GGCAAATGCTTCGGCAATGGCG-TAACAAGGCGCGAATG---TCGTCTGTCAGACGATC- 152
Query 131 TGTACCGTCGGATGTGCCGTCAGGACACGTGGCGATCTACGTAGGAAGCAGTTGCAGGAG 190
||| ||||| ||||| |||||||||||||||||| | ||||| || || |||||||||||
Sbjct 153 TGTGCCGTCAGATGTACCGTCAGGACACGTGGCGGTTTACGTTGGGAGAAGTTGCAGGAG 212
Query 191 ATTTGTGGTGCGCGCGACGTATCTGAACCA-TCCAATCCTACGGAATCTGTTGGTTCAA- 248
||| ||||||| ||||||||||||||||| ||| || || |||||| |||||| ||
Sbjct 213 ATTCGTGGTGCTTGCGACGTATCTGAACCACCCCATTCTTA-TGAATCTCTTGGTT-AAG 270
Query 249 GCTGAGGAAGAGTTCGGTTTCGTTAACCAAGGTCCGTTGGTTATCCCTTGTGAAGAATCG 308
||||| || ||||||||||| | |||||| || |||||||||||||| ||||||||||||
Sbjct 271 GCTGAAGAGGAGTTCGGTTTTGCTAACCAGGGACCGTTGGTTATCCCGTGTGAAGAATCG 330
Query 309 GTTTTCGAGGAATCGATTCGGTTTATCTCCCGGTCTGATTCGACTCGGTCAAGACGGTTT 368
|||||||||||||||||||||||||| | ||||||||||| ||||||
Sbjct 331 GTTTTCGAGGAATCGATTCGGTTTAT-----------A----ACTCGGTCAAGTCGGTTT 375
Query 369 ACTTGTCCCGATGATTTTCAGAAGAACCGCCA-GGTGGTGGGAATCAGAAGCAAGATAGA 427
|||||| |||||||||| ||||||| ||||| |||||| | | || |||||| | ||
Sbjct 376 ACTTGTACCGATGATTTAAAGAAGAATCGCCACGGTGGT---ATT-AGGAGCAAGCTGGA 431
Query 428 TCTATGGATCGAATCTCGACCGTTACTTCACGGCGTC 464
||||| ||| |||||||| ||||| ||||||||||||
Sbjct 432 TCTATTGATGGAATCTCGGCCGTTGCTTCACGGCGTC 468
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24162624707
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5