BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926950
Length=3466
Score E
Sequences producing significant alignments: (Bits) Value
AT1G75640.1 | Symbols: | Leucine-rich receptor-like protein ki... 5036 0.0
> AT1G75640.1 | Symbols: | Leucine-rich receptor-like protein
kinase family protein | chr1:28403466-28407051 REVERSE LENGTH=3586
Length=3586
Score = 5036 bits (2727), Expect = 0.0
Identities = 3226/3470 (93%), Gaps = 22/3470 (1%)
Strand=Plus/Plus
Query 1 TCTTTCCTTTCTCCACTCTAATGGCCGCAACGGTCATTTTCTTCCTTCACTTCACCGCCG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 10 TCTTTCCTTTCTCCACTCTAATGGCCGCAACGGTCATTTTCTTCCTTCACTTCGCCGCAA 69
Query 61 TCTTCTTCTCCAGATTCCACCATACTTCCGCCGTCTCATCAGAGATTCTAGCACTCACAT 120
|||||||||||||||||||||| || |||||| |||||||||||| || |||||||||||
Sbjct 70 TCTTCTTCTCCAGATTCCACCACACCTCCGCCATCTCATCAGAGACTCAAGCACTCACAT 129
Query 121 CTTTCAAACTCTCACTCCATGACCCTTTAGGAGCTCTCGAATCATGGAATCAATCATCTC 180
||||||||||||| ||||| |||||| ||||||||||||| || ||||||||||||||||
Sbjct 130 CTTTCAAACTCTCTCTCCACGACCCTCTAGGAGCTCTCGAGTCCTGGAATCAATCATCTC 189
Query 181 CATCAGCTCCATGCGACTGGCACGGCGTTTCTTGCTTCTCCGGCCGTGTCCGTGAGCTTC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 190 CATCAGCTCCATGCGACTGGCACGGCGTTTCTTGCTTCTCCGGCCGTGTCCGTGAGCTTC 249
Query 241 GTCTGCCTCGTCTTCGCCTCACCGGTCACCTCAGTCCTCGACTCGGTGAGTTGACTCAGC 300
|||| |||||||| | ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 250 GTCTTCCTCGTCTCCACCTCACCGGCCACCTCAGTCCTCGACTCGGTGAGTTGACTCAGC 309
Query 301 TCCGTAAACTCAGTCTTCACACCAACGACATAAACGGCGCCGTTCCTTCTTCTTTCTCTC 360
|||||||||| |||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 310 TCCGTAAACTAAGTCTTCACACCAACGACATAAACGGCGCCGTTCCTTCGTCTCTCTCTC 369
Query 361 GTTGTGTCTTCCTTAGAGCGCTTTATCTTCACCACAACTCCTTCTCCGGCGATTTTCCAC 420
||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 370 GTTGTGTCTTCCTTAGAGCTCTTTATCTTCACTACAACTCCTTCTCCGGCGATTTTCCAC 429
Query 421 CGGAGATACTGAATCTCA-GGAATCTCCAAGTGCTCAACGTTGCTCATAACTCACTCACC 479
|||||||||||||||| | | || ||||| || ||||||| |||||| ||||||||||||
Sbjct 430 CGGAGATACTGAATCT-ACGAAACCTCCAGGTCCTCAACGCTGCTCACAACTCACTCACC 488
Query 480 GGGAATATCTCCGACGTTACAGTCTCAAAGAGTCTCCGTTACGTCGATTTATCTTCCAAT 539
|| ||| | |||||||| |||||||| ||||| || |||||||||||||| |||||||||
Sbjct 489 GGAAATCTATCCGACGTCACAGTCTCGAAGAGCCTTCGTTACGTCGATTTGTCTTCCAAT 548
Query 540 GCATTATCCAGTGAGATTCCGGCGAATTTCTCGGCGGATTCATCTCTCCAGCTCATCAAC 599
||| ||||| || ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 549 GCAATATCCGGTAAGATTCCGGCGAATTTCTCAGCGGATTCATCTCTCCAGCTCATCAAC 608
Query 600 CTCTCGTTCAACCGTTTTTCCGGTGAGATCCCGGCGACATTGGGGCAGCTACAAGACCTA 659
||||||||||||| || ||||||||||||||||| |||||||| || |||||||||||
Sbjct 609 CTCTCGTTCAACCACTTCTCCGGTGAGATCCCGGCTACATTGGGACAACTACAAGACCTC 668
Query 660 GAGTATCTATGGCTAGACTCAAACCAGTTACAAGGTACACTACCATCTGCATTAGCCAAC 719
|||||||| ||||||||||||||||| |||||||| ||| ||||||| ||||||||||||
Sbjct 669 GAGTATCTCTGGCTAGACTCAAACCAATTACAAGGCACAATACCATCCGCATTAGCCAAC 728
Query 720 TGTTCGTCGCTTATACACTTCAGCGTAACCGGAAATTCA-CTCACCGGTCTAATTCCGGC 778
||||| |||||||||||||||||||||||||| || ||| ||||||||| |||||||||
Sbjct 729 TGTTCATCGCTTATACACTTCAGCGTAACCGGTAA-TCACCTCACCGGTTTAATTCCGGT 787
Query 779 GACTTTCGGGAAGATTCGAAGCCTCCAAGTGATTTCATTATCGGAAAATTCACTTACCGG 838
||||| || | |||||||||||| || ||||||||||||||||| |||||| |||||||
Sbjct 788 TACTTTAGGCACGATTCGAAGCCTGCAGGTGATTTCATTATCGGAGAATTCATTTACCGG 847
Query 839 TACAGTTCCGGCGAGTCTTGTATGTGGCTCTTCAGGTTACAATTCCTCCATGCGAATCAT 898
||||||||||| |||||| ||||||| | ||||||||||||||||||||||||||||||
Sbjct 848 TACAGTTCCGGTTAGTCTTCTATGTGGTTATTCAGGTTACAATTCCTCCATGCGAATCAT 907
Query 899 TCAATTGGGAGTTAATAACTTCACGAGAATAGCTAAGCCATCGTCAAACGCAGCTTGCGT 958
|||||| |||||||||||||||||| ||||||||||| | ||||||| |||||||||||
Sbjct 908 TCAATTAGGAGTTAATAACTTCACGGGAATAGCTAAG-C--CGTCAAATGCAGCTTGCGT 964
Query 959 GAACCCTAATTTGGAGATTCTCGACATTCACGAGAATCGCATTAATGGCGATTTTCCCGC 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 965 GAACCCTAATTTGGAGATTCTCGACATTCACGAGAATCGCATTAATGGCGATTTTCCCGC 1024
Query 1019 GTGGTTGACAGATTTGACCTCTTTAGTGGTTTTGGATATATCTGGAAACGGTTTCTCCGG 1078
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1025 GTGGTTGACTGATTTGACCTCTTTAGTGGTTTTGGATATTTCTGGAAACGGTTTCTCCGG 1084
Query 1079 CGGTTTTCCGGATAAGGTTGGGAACTTTG-CGGCGCTTCAGGAGCTGAGAGTGGCAAACA 1137
||| || ||| ||| ||||||||| ||| ||||||||||||||||||||| || ||||
Sbjct 1085 TGGTGTTACGGCTAAAGTTGGGAAC-TTGATGGCGCTTCAGGAGCTGAGAGTAGCTAACA 1143
Query 1138 ATTCACTCGTTGGGGAAATTCCGACGAGTAT-CGGAGATTGTAGATCGTTACGAGTCGTT 1196
||||||| ||||| ||||||||||||||||| || | |||| | ||||||| ||||||||
Sbjct 1144 ATTCACTTGTTGGAGAAATTCCGACGAGTATCCGTA-ATTGCAAATCGTTAAGAGTCGTT 1202
Query 1197 GATTTCGAAGGAAACAGGTTCTCGGGTCAGATTCCGGGTTTTCTAAGTCAGTTAGGGAGC 1256
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1203 GATTTCGAAGGAAACAAGTTCTCGGGTCAGATTCCGGGTTTTCTAAGTCAGTTACGGAGC 1262
Query 1257 CTGACAACGATATCTCTTGGAAGAAACGGGTTCTCGGGTCGGATTCCGTCGGATCTTCTC 1316
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1263 CTGACAACGATATCTCTTGGAAGAAACGGGTTCTCGGGTCGGATTCCATCGGATCTTCTC 1322
Query 1317 AGCTTACACGGACTTGAAACATTGAATCTCAATGAAAATCATCTCACCGGAACTATACCG 1376
||||| ||||||| || ||||||||||||||||||||||||||||||||| | ||||||
Sbjct 1323 AGCTTGTACGGACTCGAGACATTGAATCTCAATGAAAATCATCTCACCGGAGCAATACCG 1382
Query 1377 TCGGAGATAACGAAGCTAGCTAATCTCAGCATCCTTAATCTCAGTTTCAACAGATTCTCC 1436
||||||||||| |||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 1383 TCGGAGATAACAAAGCTAGCTAATCTTACCATCCTTAATCTCAGTTTCAACAGATTCTCC 1442
Query 1437 GGCGAAATTCCGTCTAATGTGGGTGATCT-AAAGAGCGTGAGTGTTCTAAACATAAGTGG 1495
|||||| ||||||| |||||||||||||| ||| ||| |||||||||| |||||||||||
Sbjct 1443 GGCGAAGTTCCGTCCAATGTGGGTGATCTGAAA-AGCTTGAGTGTTCTCAACATAAGTGG 1501
Query 1496 GTGCGGGTTAACGGGTCGGATACCGGTTAGCGTCGGTGGATTAATGAAGCTTCAGGTCTT 1555
|||||||||||||||||||||||||||||| | | |||||||||||||||||||| ||
Sbjct 1502 ATGCGGGTTAACGGGTCGGATACCGGTTAGCATTAGCGGATTAATGAAGCTTCAGGTTTT 1561
Query 1556 GGATTTAAGTAAACAGAGAATCTCCGGTGAATTACCTGTCGAACTCTTTGGCTTGCCGGA 1615
|||| ||||||||||||||||||| ||| | ||||| |||||||| ||||| || |||||
Sbjct 1562 GGATATAAGTAAACAGAGAATCTCTGGTCAGTTACCAGTCGAACTATTTGGTTTACCGGA 1621
Query 1616 TCTTCAAGTGGTTGCTCTTGGAAACAA--TGCACTTGACGGCGTTGTACCGGAAGGTTTT 1673
||||||||||||||||||||||||||| || || | |||||| ||||||||||||||
Sbjct 1622 TCTTCAAGTGGTTGCTCTTGGAAACAACTTG--CTCGGCGGCGTCGTACCGGAAGGTTTC 1679
Query 1674 AGCAGTTTGGTTAGTCTTCGGTTCTTAAATCTCAGTTCCAACTTATTCTCCGGTCATATC 1733
||||| |||||||||||| || |||||||||||||||||||||||||||||| ||||||
Sbjct 1680 AGCAGCTTGGTTAGTCTTAAGTACTTAAATCTCAGTTCCAACTTATTCTCCGGACATATC 1739
Query 1734 CCAAAGAACTATGGATTTCTCAAGTCATTACAAGTGCTTTCGTTGTCTCATAATCGGATC 1793
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 1740 CCAAAGAACTATGGATTTCTCAAGTCATTACAAGTGCTTTCGTTGTCTCACAATCGAATA 1799
Query 1794 TCCGGTTCAATCCCGCCGGAGATTGGGAATTGTACCAGTCTTGAGGTTCTTGAGCTCAGT 1853
|||||| |||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 1800 TCCGGTACAATCCCGCCGGAGATTGGGAATTGTTCCAGTCTTGAGGTTCTTGAGCTTGGT 1859
Query 1854 TCAAACCGGTTAAAGGGTCACATTCCGGTTTACGTTTCTAAATTGTCTCGTCTGAGGAAA 1913
|| || | ||||||||||||||||||||||||||||| || ||||||| | ||| |||
Sbjct 1860 TCTAATAGTTTAAAGGGTCACATTCCGGTTTACGTTTCCAAGTTGTCTCTTTTGAAGAAG 1919
Query 1914 CTTGATTTGAGTCACAACAGTTTAACAGGGAGTATTCCGGATCAGATTTCTAAGGATTCG 1973
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1920 CTTGATTTGAGTCACAACAGTTTAACAGGGAGTATTCCGGATCAGATTTCTAAGGATTCT 1979
Query 1974 TCTCTTGAATCTCTCTTGCTGAATTCGAATTCTCTATCAGGTCGAATACCGGAATCTTTT 2033
||||| ||||||||| |||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 1980 TCTCTAGAATCTCTCCTGCTTAATTCGAATTCTCTATCGGGTCGAATACCGGAATCTTTA 2039
Query 2034 TCAAGATTGACGAACCTAACATCGTTGGATCTTTCGTCTAACAGATTGAATTCTACTATA 2093
|||||||||||||| ||||| |||||||||||||||| |||||||||||||| ||||||
Sbjct 2040 TCAAGATTGACGAATCTAACCGCGTTGGATCTTTCGTCGAACAGATTGAATTCCACTATA 2099
Query 2094 CCATCAAGTCTCTCTCGGCTTCATTCCTTGAACTACTTCAACTTATCAAGAAACAGTTTG 2153
|||||||||||||||||||||| || ||||||||| ||||||||||||||||||||||||
Sbjct 2100 CCATCAAGTCTCTCTCGGCTTCGTTTCTTGAACTATTTCAACTTATCAAGAAACAGTTTG 2159
Query 2154 GAAGGGCAGATTCCAGAAGTTTTAGCTGCGCGTTTCACTAACCCGTCGGTCTTTGTCAAT 2213
|||||| |||||||||||| | ||||||||||||||||||||||| | |||||||||||
Sbjct 2160 GAAGGGGAGATTCCAGAAGCTCTAGCTGCGCGTTTCACTAACCCGACCGTCTTTGTCAAG 2219
Query 2214 AACCCGAGACTCTGCGGTAAACCGCTTGGTATAGAATGTCCAAACGTTCGGCGGAGAAGA 2273
|||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2220 AACCCGGGACTCTGCGGTAAACCGCTTGGTATAGAATGTCCAAACGTTCGAAGGAGAAGA 2279
Query 2274 AGAAGAAAGCTAATTCTACTAGTGACACTAGCAGTTGCTGGAGCTTTATTGCTGTTACTC 2333
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 2280 AGAAGAAAGCTAATTCTACTAGTGACACTAGCAGTGGCTGGAGCTTTGTTGCTGTTACTC 2339
Query 2334 TGTTGTTGTGGTTATGTGTTCAGTTTATGGAGATGGCGGAACAAAATAAGATCGGGCTTG 2393
||||||||||||||||||||||||||||||| ||||||||||||| |||||| |||||||
Sbjct 2340 TGTTGTTGTGGTTATGTGTTCAGTTTATGGAAATGGCGGAACAAACTAAGATTGGGCTTG 2399
Query 2394 AGTCGGGACAAGAAAGGGACCCCGTCACGTACATCTCGAGCGAGTTCTGGTGGGACAAGA 2453
||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 2400 AGTCGGGACAAGAAAGGGACCCCCTCACGTACATCTAGAGCGAGTTCTGGTGGGACAAGA 2459
Query 2454 GGAGAAGACAACAATGGTGGGCCTAAACTTGTGATGTTCAATAACAAGATCACATTAGCC 2513
|||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||
Sbjct 2460 GGAGAAGACAACAATGGTGGACCTAAACTTGTGATGTTCAACAACAAGATCACGTTAGCT 2519
Query 2514 GAAACCTTAGAAGCCACACGACAATTCGACGAAGAAAACGTATTGAGTC-GAGGAAGGTA 2572
|||||||||||||||||| ||||||| |||||||| ||||||||||| | ||||||||||
Sbjct 2520 GAAACCTTAGAAGCCACAAGACAATTTGACGAAGAGAACGTATTGAG-CAGAGGAAGGTA 2578
Query 2573 CGGGTTGGTTTTCAAGGCAACGTTTAGAGACGGGATGGTTCTATCGGTTCGTAGACTCAT 2632
|||||||| |||||||| ||||||||||| |||||||||||||||||||||||||| ||
Sbjct 2579 TGGGTTGGTCTTCAAGGCGACGTTTAGAGATGGGATGGTTCTATCGGTTCGTAGACTAAT 2638
Query 2633 GGACGGTGCTTCGATAACTGACGCAACGTTCCGTAACCAAGCTGAGGCTTTAGGTAGAGT 2692
||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 2639 GGATGGTGCTTCGATAACCGATGCAACGTTCCGTAACCAAGCTGAGGCTTTAGGTAGAGT 2698
Query 2693 GAAGCACAAGAACATCACTGTCTTGAGAGGTTATTACTGCGGACCGCCCGATCTAAGACT 2752
|||||||||||||||||| |||||||||||||||||||||||||| || |||||||||||
Sbjct 2699 GAAGCACAAGAACATCACGGTCTTGAGAGGTTATTACTGCGGACCACCTGATCTAAGACT 2758
Query 2753 TCTAGTTTACGACTACATGCCCAACGGAAACCTCTCAACGCTTTTGCAAGAAGCATCTCA 2812
||| |||||||||||||||||||||||||||||| | ||||||||||||||||| |||||
Sbjct 2759 TCTTGTTTACGACTACATGCCCAACGGAAACCTCGCTACGCTTTTGCAAGAAGCCTCTCA 2818
Query 2813 CCAAGACGGACACGTCTTGAACTGGCCGATGCGTCATCTCATCGCCCTCGGAATCGCTAG 2872
|||||||||||| |||||||||||||| |||||||||||||| || || |||||||||||
Sbjct 2819 CCAAGACGGACATGTCTTGAACTGGCCAATGCGTCATCTCATTGCTCTTGGAATCGCTAG 2878
Query 2873 AGGACTCTCCTTTTTGCATTCTTTAGCAATCATTCACGGCGATCTTAAACCGCAAAACGT 2932
|||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2879 AGGACTGTCCTTCTTGCATTCTTTATCAATCATTCACGGCGATCTTAAACCGCAAAACGT 2938
Query 2933 TCTCTTCGACGCTGACTTTGAAGCGCATTTGTCAGAATTCGGGTTAGATAGATTGACGGC 2992
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2939 ACTCTTCGACGCTGACTTTGAAGCGCATTTGTCAGAATTCGGGTTAGATAGATTGACAGC 2998
Query 2993 GTTGACTCCAGCTGAAGAACCGTCTACATCATCCACTCCCGTCGGGTCTTTAGGCTACAT 3052
||||||||||||||||||||| || || ||||||||||||||||||||||||||||||||
Sbjct 2999 GTTGACTCCAGCTGAAGAACCATCCACTTCATCCACTCCCGTCGGGTCTTTAGGCTACAT 3058
Query 3053 TGCACCGGAAGCGGCATTAACGGGTGAACCAAGTAAAGAGAGTGACGTGTACAGCTTCGG 3112
|||||||||||||| |||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 3059 TGCACCGGAAGCGGGTTTAACGGGTGAAACAAGTAAAGAGAGCGACGTGTACAGCTTCGG 3118
Query 3113 GATCGTGTTGTTAGAGATTTTAACGGGGAAAAAGGCAGTGATGTTTACAGAGGATGAAGA 3172
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 3119 GATCGTGTTGTTAGAGATCTTAACGGGGAAAAAGGCAGTGATGTTTACAGAGGATGAAGA 3178
Query 3173 TATAGTGAAATGGGTGAAGAGACAGTTACAAAAAGGTCAAATCGTTGAGTTGCTTGAACC 3232
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 3179 TATAGTGAAATGGGTGAAGAGACAGTTACAAAAAGGTCAGATCGTTGAGTTGCTTGAACC 3238
Query 3233 GGGTTTGTTGGAGCTTGACCCGGAAAGTTCAGAGTGGGAAGAGTTCTTGTTAGGGATTAA 3292
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 3239 GGGTTTGTTGGAGCTTGACCCGGAAAGTTCGGAGTGGGAAGAGTTCTTGTTAGGGATCAA 3298
Query 3293 AGTTGGGTTGTTGTGTACCGGAGGAGACGTCGTTGATCGTCCGTCTATGGCTGATGTTGT 3352
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 3299 AGTTGGGTTGTTGTGTACTGGAGGAGACGTCGTTGATCGTCCGTCTATGGCTGATGTTGT 3358
Query 3353 TTTCATGCTCGAAGGGTGTAGAGTCGGTCCGGCGATTTCCTTGTCCGCCGATCCTACTTC 3412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3359 TTTCATGCTCGAAGGGTGTAGAGTCGGTCCGGCGATTTCCTTGTCCGCCGATCCTACTTC 3418
Query 3413 ACCTACTTC-CCCAGCCGCCACCGCCGCTTCTTGAAATAGCT-TTATCTT 3460
||||||||| ||| ||||| ||||||| |||||||||| ||| || ||||
Sbjct 3419 ACCTACTTCTCCC-GCCGCAACCGCCGTTTCTTGAAATTGCTGTTTTCTT 3467
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 172524116977
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5