BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg926957

Length=327
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G75717.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   350    6e-96


> AT1G75717.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: cellular_component unknown; Has 30201 Blast 
hits to 17322 proteins in 780 species: Archae - 12; Bacteria 
- 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses 
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr1:28433919-28434261 
FORWARD LENGTH=343
Length=343

 Score =  350 bits (189),  Expect = 6e-96
 Identities = 256/288 (89%), Gaps = 5/288 (2%)
 Strand=Plus/Plus

Query  24   TCATGAAGCTCTTCCACGGATTACGAAAGATTTTCATGAGGCTTATCGATCTCACTCTCC  83
            |||||||||||||||||  |||| |||||||  |||||||||| || ||| ||||||| |
Sbjct  57   TCATGAAGCTCTTCCACAAATTAGGAAAGATCCTCATGAGGCTCATTGATTTCACTCTTC  116

Query  84   CTTCCTCCTCCCGCAGGCAGAAGAATTTC--GT-CCGCACCAACGACGAAGAGAGGTATG  140
             ||||||||| ||| ||||||||||   |   | |||| ||  ||| | ||| |||| ||
Sbjct  117  ATTCCTCCTCTCGCCGGCAGAAGAAGAACAACTCCCGCTCCGGCGATGGAGAAAGGTTTG  176

Query  141  AGCCGCCGAAGATTTCGTGTAGTAGTTCGTACTATTCGTCTCACGTACACTACAGTGAAG  200
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  177  AGCCGCCGAAGATTTCGTGTAGTAGTTCGTACTATTCGTCTCACGTACACTACAGTGAAG  236

Query  201  CTATCGCAGATTGCATAGAGTTCTTCAACAAGTCTTCTGCTATGTCTTGTGAAGATCATG  260
            |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct  237  CTATCGCAGATTGCATAGAGTTTTTCAACAAGTCTTCTGCTATGTCTTGTGAAGATCATG  296

Query  261  AAGCTCGCCTTGTTCACGATCA-CGATCGTGACTGTTTTTACGTTTAG  307
            |||||||||||||| || || | |||||||||||||| ||||||||||
Sbjct  297  AAGCTCGCCTTGTTAACAAT-ATCGATCGTGACTGTTATTACGTTTAG  343



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15231127947


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5