BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg926960

Length=341
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G75750.1 | Symbols: GASA1 | GAST1 protein homolog 1 | chr1:2...   512    8e-145
  AT2G18420.1 | Symbols:  | Gibberellin-regulated family protein ...   141    4e-33 


> AT1G75750.1 | Symbols: GASA1 | GAST1 protein homolog 1 | chr1:28441526-28442367 
REVERSE LENGTH=667
Length=667

 Score =  512 bits (277),  Expect = 8e-145
 Identities = 320/340 (94%), Gaps = 6/340 (2%)
 Strand=Plus/Plus

Query  5    CTCTCCTTGGAGAATTATGGCTATTTCAAAAGCTCTTATTGCTTCTCTTCTCATATCTCT  64
            ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  68   CTCTCCTTGGAGAATCATGGCTATTTCAAAAGCTCTTATCGCTTCTCTTCTCATATCTCT  127

Query  65   TCTTGTTCTTCAACTCGTCCAGGCCGATGTCTTCGAAAACTCTCAGAAGAAAAAAGGTTA  124
            ||||||||| |||||||||||||| ||||   |||||||||| ||||||||||| |||||
Sbjct  128  TCTTGTTCTCCAACTCGTCCAGGCTGATG---TCGAAAACTCACAGAAGAAAAATGGTTA  184

Query  125  CGCAAAGAAGATCGATTGTGGGAGTGCTTGTGTAGCACGGTGCAGGCTCTCGAGGAGGCC  184
            ||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct  185  CGCAAAGAAGATCGATTGTGGGAGTGCGTGTGTAGCACGGTGCAGGCTTTCGAGGAGGCC  244

Query  185  GAGGCTGTGTCACAGAGCGTGCGGGACTTGCTGCTACAGGTGCAACTGTGTGCCTCCGGG  244
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  245  GAGGCTGTGTCACAGAGCGTGCGGGACTTGCTGCTACAGGTGCAACTGTGTGCCTCCGGG  304

Query  245  CACATACGGTAACTACGACACGTGCCAGTGCTACGCTACCCTCACCACCCACGGTGGACG  304
             || ||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct  305  TACGTACGGAAACTACGACAAGTGCCAGTGCTACGCTAGCCTCACCACCCACGGTGGACG  364

Query  305  CCGCAAGTGCCCATAAGAA-A--CAAAGCTCTTAATAGCT  341
            ||||||||||||||||||| |  ||||||||||||| |||
Sbjct  365  CCGCAAGTGCCCATAAGAAGAAACAAAGCTCTTAATTGCT  404


> AT2G18420.1 | Symbols:  | Gibberellin-regulated family protein 
| chr2:7993801-7994554 FORWARD LENGTH=565
Length=565

 Score =  141 bits (76),  Expect = 4e-33
 Identities = 137/166 (83%), Gaps = 5/166 (3%)
 Strand=Plus/Plus

Query  162  CGGTGCAGGCTCTCGAGGAGGCCGAGGCTGTGTCACAGAGCGTGCGGGACTTGCTGCTAC  221
            |||||||| || ||||| ||||| |  || |||||||||||||||||||||||||||  |
Sbjct  187  CGGTGCAGTCTTTCGAGTAGGCCAAATCTTTGTCACAGAGCGTGCGGGACTTGCTGCG-C  245

Query  222  -AGGTGCAACTGTGTGCCTCCGGGCACATACGGTAACTACGACACGTG-CCAGTGCTACG  279
             ||||||||||| ||| | |||||||||| ||| ||||||||||  || || |||||| |
Sbjct  246  TAGGTGCAACTGCGTGGCACCGGGCACATCCGGAAACTACGACAAATGTCC-GTGCTATG  304

Query  280  CTACCCTCACCACCCACGGTGGACGCCGCAAGTGCCCATAAGAAAC  325
             || ||| ||||||||||| |||||| | ||||| || ||| ||||
Sbjct  305  GTAGCCTAACCACCCACGGAGGACGCAGAAAGTGTCCTTAA-AAAC  349



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15934876433


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5