BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926966
Length=1034
Score E
Sequences producing significant alignments: (Bits) Value
AT1G75800.1 | Symbols: | Pathogenesis-related thaumatin superf... 1655 0.0
AT5G02140.1 | Symbols: | Pathogenesis-related thaumatin superf... 58.4 1e-07
> AT1G75800.1 | Symbols: | Pathogenesis-related thaumatin superfamily
protein | chr1:28458782-28460854 FORWARD LENGTH=1507
Length=1507
Score = 1655 bits (896), Expect = 0.0
Identities = 987/1032 (96%), Gaps = 2/1032 (0%)
Strand=Plus/Plus
Query 4 TTCTTCTTCTCCAATTCAATGGCTCTTCCGTTGCCATTGATCTTCCTTATCTTCTCTAAT 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 90 TTCTTCTTCTCCAATTCAATGGCTCTTCCGTTGCCATTGATCTTCCTTATCTTCTCTCAT 149
Query 64 TTGTTCGTTTCTGGAGTTAGATCAACGAGCTTCGTAATGGTGAACAAATGCGAATACACA 123
||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 150 TTGTTCGTTTCTGGAGTTAGATCAACGAGCTTCATTATGGTGAACAAATGCGAATACACA 209
Query 124 GTCTGGCCTGGACTTTTATCAAACGCCGGAGTTCCACCACTTCCGACGACCGGATTCGTA 183
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 210 GTCTGGCCTGGACTTTTATCAAACGCCGGAGTTCCACCACTTCCGACGACCGGATTCGTT 269
Query 184 CTCCAAAAAGGCGAAGAACGAACAATCAACGCTCCAACTTCATGGGGAGGAAGATTCTGG 243
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 270 CTCCAAAAAGGCGAAGAACGAACAATCAGCGCTCCAACTTCATGGGGAGGAAGATTCTGG 329
Query 244 GGAAGAACTCAATGCTCCACCGACACCGACGGAAAATTCACTTGCCTCACCGGAGATTGC 303
|| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 330 GGGAGAACTCAATGTTCCACCGACACCGACGGAAAATTCACTTGTCTCACCGGAGATTGC 389
Query 304 GGATCCGGAACCATCGAATGCTCCGGATCCGGAGCAGCACCTCCAGCAACACTAGCGGAA 363
||||| || ||| ||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 390 GGATCTGGTACCCTCGAATGCTCCGGATCCGGAGCAACACCACCAGCAACACTAGCGGAA 449
Query 364 TTCACACTTGACGGATCTAACGGACTCGATTTCTACGACGTAAGTCTCGTCGACGGTTAC 423
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 450 TTCACACTAGACGGATCTAACGGACTCGATTTCTACGACGTTAGTCTCGTCGACGGTTAC 509
Query 424 AACGTCCCGATGCTAGTGGCTCCACAAGGAGGCTCTGGTTTAAACTGTAGCAGCACCGGA 483
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 510 AACGTCCCGATGCTAGTGGCTCCACAAGGAGGCTCGGGTTTAAACTGTAGCAGCACCGGA 569
Query 484 TGCGTTGTAGATCTGAACGGTTCGTGTCCGTCGGAGCTAAAAGTGACGAGTTTAGACGGC 543
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 570 TGCGTTGTAGATCTGAACGGTTCGTGTCCGTCGGAGCTTAAAGTGACGAGTTTAGACGGC 629
Query 544 GGAGGTAAACTATCTATGGGATGTAAAAGCGCGTGTGAAGCTTTTCGTACGCCGGAGTAT 603
||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 630 AGAGGTAAACAATCCATGGGATGTAAAAGCGCGTGTGAAGCTTTTCGTACGCCGGAGTAT 689
Query 604 TGTTGCAGCGGCGCGTACGGTACACCTGACACGTGTAAACCGTCGTCGTATTCGTTGATG 663
|||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 690 TGTTGCAGCGGCGCCCACGGTACACCTGACACGTGTAAACCGTCGTCGTACTCGTTGATG 749
Query 664 TTTAAAACCGCGTGCCCACGTGCTTACAGCTACGCTTACGATGATCAGAGTAGTACCTTC 723
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 750 TTTAAAACTGCGTGTCCACGTGCTTACAGCTACGCTTACGATGATCAGAGTAGTACCTTC 809
Query 724 ACTTGTGCCAAATCTCCTAATTACGTTATCACGTTTTGCCCAACGCCTAACACCAGTCAA 783
|| ||||| ||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 810 ACATGTGCTGAATCTCCTAATTACGTTATCACGTTTTGCCCTACTCCTAACACCAGTCAA 869
Query 784 AAATCATCTCAAGATCAGAACCCAGATCCGAAACAGACGACAGCA-CCGGGAACGTCGTC 842
||||||||||||||||||| ||||||||| |||| ||||||| || |||||| |||||||
Sbjct 870 AAATCATCTCAAGATCAGAGCCCAGATCCCAAACCGACGACACCAACCGGGA-CGTCGTC 928
Query 843 GACAACTCCTGCCGGAGACAGTAGTACGACGTGGTCACCGGTAGATACATCGATGATATA 902
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 929 GACAACTCCTGCCGGAGATAGTAGTACGACGTGGTCACCGGTAGATACATCAATGATATA 988
Query 903 CGAAGGAGCTTTGGATCAGAGCAAAGGATCACCAACCACGTGTCATCTTTCGTTATGTGG 962
|||||||||||||||||| | |||||||||||| |||||||||||||||||||||||||
Sbjct 989 CGAAGGAGCTTTGGATCAAAACAAAGGATCACCGTCCACGTGTCATCTTTCGTTATGTGG 1048
Query 963 GATCACAGTCACACTTGCGCTGGCCTTTTGTCGGATGTGGCGGCTCTTTTGACACCTAAC 1022
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1049 AATCACAGTCACACTTGCGCTGGCCTTTTGTCGGATGTGGCGGCTCTTTTGACACCTAAC 1108
Query 1023 TCTGTCGCCCGC 1034
| |||| |||||
Sbjct 1109 TTTGTCTCCCGC 1120
> AT5G02140.1 | Symbols: | Pathogenesis-related thaumatin superfamily
protein | chr5:423384-424437 FORWARD LENGTH=885
Length=885
Score = 58.4 bits (31), Expect = 1e-07
Identities = 33/34 (97%), Gaps = 0/34 (0%)
Strand=Plus/Plus
Query 392 ATTTCTACGACGTAAGTCTCGTCGACGGTTACAA 425
|||||||||||||||||||||||||||||| |||
Sbjct 368 ATTTCTACGACGTAAGTCTCGTCGACGGTTTCAA 401
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50686254323
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5