BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926970
Length=283
Score E
Sequences producing significant alignments: (Bits) Value
AT2G26020.1 | Symbols: PDF1.2b | plant defensin 1.2b | chr2:110... 337 4e-92
AT5G44420.1 | Symbols: PDF1.2, PDF1.2A, LCR77 | plant defensin ... 335 1e-91
AT5G44430.1 | Symbols: PDF1.2c | plant defensin 1.2C | chr5:179... 331 2e-90
AT2G26010.1 | Symbols: PDF1.3 | plant defensin 1.3 | chr2:11087... 305 1e-82
> AT2G26020.1 | Symbols: PDF1.2b | plant defensin 1.2b | chr2:11089250-11089597
FORWARD LENGTH=274
Length=274
Score = 337 bits (182), Expect = 4e-92
Identities = 237/263 (90%), Gaps = 6/263 (2%)
Strand=Plus/Plus
Query 4 AAGTAGTAATAATCATCATGGCTAAGTTTGCTTCCATCATCACCCTTATCTTCGCTGCTC 63
|||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 15 AAGTAGTAATAATCATCATGGCTAAGTTTGCTTCCATCATCACCTTTATCTACGCTGCTC 74
Query 64 TTGTTCTCTTTGCTGCATTTGAAGCACCAACAACTG-TGGAAGCACAGAGGTTGTGCGAG 122
||||||||||||| || ||||||| |||||||| || |||||||||||| ||||||||||
Sbjct 75 TTGTTCTCTTTGCAGCTTTTGAAGTACCAACAA-TGGTGGAAGCACAGAAGTTGTGCGAG 133
Query 123 AAGCCAAGTGGGACATGGTCAGGAGTTTGCGGAAACAATGGCGCGTGCA-GAAATCAGTG 181
||||||||||| || |||||||||||||||||||||| || |||| ||| ||||||
Sbjct 134 AAGCCAAGTGGTACTTGGTCAGGAGTTTGCGGAAACAGCAATGCATGCAAGAA-TCAGTG 192
Query 182 CATTAGAC-TTGAGGGAGCACGACATGGATCTTGCAACTACGTCTTCCCAGCTCATAAGT 240
||||| || |||| |||||| |||||||||||||||||| |||||||||||||| ||||
Sbjct 193 CATTA-ACCTTGAAGGAGCAAAACATGGATCTTGCAACTATGTCTTCCCAGCTCACAAGT 251
Query 241 GTATCTGTTACTTCCCATGTTAA 263
||||||||||| |||||||||||
Sbjct 252 GTATCTGTTACGTCCCATGTTAA 274
> AT5G44420.1 | Symbols: PDF1.2, PDF1.2A, LCR77 | plant defensin
1.2 | chr5:17907069-17907598 REVERSE LENGTH=438
Length=438
Score = 335 bits (181), Expect = 1e-91
Identities = 249/280 (89%), Gaps = 12/280 (4%)
Strand=Plus/Plus
Query 7 TAGTAATAATCATCATGGCTAAGTTTGCTTCCATCATCACCCTTATCTTCGCTGCTCTTG 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 35 TAGTAATAATCATCATGGCTAAGTTTGCTTCCATCATCACCCTTATCTTCGCTGCTCTTG 94
Query 67 TTCTCTTTGCTGCATTT-GAAGCACCAACAACTG-TGGAAGCACAGAGGTTGTGCGAGAA 124
||||||||||||| ||| || ||||| ||| || |||||||||||| ||||||||||||
Sbjct 95 TTCTCTTTGCTGC-TTTCGACGCACCGGCAA-TGGTGGAAGCACAGAAGTTGTGCGAGAA 152
Query 125 GCCAAGTGGGACATGGTCAGGAGTTTGCGGAAACAATGGCGCGTGCA-GAAATCAGTGCA 183
||||||||||||||||||||| ||||||||||||| | || |||| ||| ||||||||
Sbjct 153 GCCAAGTGGGACATGGTCAGGGGTTTGCGGAAACAGTAATGCATGCAAGAA-TCAGTGCA 211
Query 184 TTAGAC-TTGAGGGAGCACGA-CATGGATCTTGCAACTACGTCTTCCCAGCTCATAAGTG 241
||| || |||| ||||| | | |||||||| |||||||| ||||||||||| || |||||
Sbjct 212 TTA-ACCTTGAAGGAGC-CAAACATGGATCATGCAACTATGTCTTCCCAGCACACAAGTG 269
Query 242 TATCTGTTACTTCCCATGTTAATT-TACCTAAAAATCTTT 280
|||||||||| ||||||||||| | |||| || |||||||
Sbjct 270 TATCTGTTACGTCCCATGTTAAATCTACC-AATAATCTTT 308
> AT5G44430.1 | Symbols: PDF1.2c | plant defensin 1.2C | chr5:17908945-17909507
REVERSE LENGTH=453
Length=453
Score = 331 bits (179), Expect = 2e-90
Identities = 247/278 (89%), Gaps = 12/278 (4%)
Strand=Plus/Plus
Query 8 AGTAATAATCA-TCATGGCTAAGTTTGCTTCCATCATCACCCTT-ATCTTCGCTGCTCTT 65
||| ||||| | |||||||||||| |||| ||||||||| |||| | ||||||||||||
Sbjct 52 AGT-ATAAT-AGTCATGGCTAAGTCTGCTACCATCATCA-CCTTCCTTTTCGCTGCTCTT 108
Query 66 GTTCTCTTTGCTGCATTTGAAGCACCAACAACT-GTGGAAGCACAGAGGTTGTGCGAGAA 124
|||||||||||||| |||||||||||||||| | ||||||||||||| ||||||||||||
Sbjct 109 GTTCTCTTTGCTGCTTTTGAAGCACCAACAA-TGGTGGAAGCACAGAAGTTGTGCGAGAA 167
Query 125 GCCAAGTGGGACATGGTCAGGAGTTTGCGGAAACAATGGCGCGTGCA-GAAATCAGTGCA 183
||||||||||||||||||||| ||||||||||||| | || |||| ||| ||||||||
Sbjct 168 GCCAAGTGGGACATGGTCAGGCGTTTGCGGAAACAGTAATGCATGCAAGAA-TCAGTGCA 226
Query 184 TTAGAC-TTGAGGGAGCACGACATGGATCTTGCAACTACGTCTTCCCAGCTCATAAGTGT 242
||| || ||||||||||| |||||||||||||||||| |||||||||||||| || |||
Sbjct 227 TTA-ACCTTGAGGGAGCAAAACATGGATCTTGCAACTATGTCTTCCCAGCTCACAAATGT 285
Query 243 ATCTGTTACTTCCCATGTTAATTTACCTAAAAATCTTT 280
||||||||| |||||||||||| |||| ||||||||||
Sbjct 286 ATCTGTTACGTCCCATGTTAATCTACC-AAAAATCTTT 322
> AT2G26010.1 | Symbols: PDF1.3 | plant defensin 1.3 | chr2:11087348-11087944
FORWARD LENGTH=495
Length=495
Score = 305 bits (165), Expect = 1e-82
Identities = 230/260 (88%), Gaps = 9/260 (3%)
Strand=Plus/Plus
Query 8 AGTAATAATCATCATGGCTAAGTTTGCTTCCATCATCACCCTT-ATCTTCGCTGCTCTTG 66
|||||| || ||||||||||||| |||| ||||||||| | || |||||||||||||||
Sbjct 52 AGTAAT-ATAATCATGGCTAAGTCTGCTGCCATCATCA-CTTTCCTCTTCGCTGCTCTTG 109
Query 67 TTCTCTTTGCTGCATTTGAAGCACCAACAACTG-TGGAAGCACAGAGGTTGTGCGAGAAG 125
||||||||||||| ||||||||||| | || || |||||||||||| |||||||||||||
Sbjct 110 TTCTCTTTGCTGCTTTTGAAGCACCGATAA-TGGTGGAAGCACAGAAGTTGTGCGAGAAG 168
Query 126 CCAAGTGGGACATGGTCAGGAGTTTGCGGAAACAATGGCGCGTGCA-GAAATCAGTGCAT 184
|||||||| || |||||||||||||||||||||| ||||||| ||| |||||||||
Sbjct 169 CCAAGTGGTACTTGGTCAGGAGTTTGCGGAAACAGCAATGCGTGCAAGAA-TCAGTGCAT 227
Query 185 TAGAC-TTGAGGGAGCACGACATGGATCTTGCAACTACGTCTTCCCAGCTCATAAGTGTA 243
|| || ||||||| ||| |||||||||||||||||| |||||||||||||| |||||||
Sbjct 228 TA-ACCTTGAGGGGGCAAAACATGGATCTTGCAACTATGTCTTCCCAGCTCACAAGTGTA 286
Query 244 TCTGTTACTTCCCATGTTAA 263
||||||||||||||||||||
Sbjct 287 TCTGTTACTTCCCATGTTAA 306
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 13019346991
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5