BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926972
Length=632
Score E
Sequences producing significant alignments: (Bits) Value
AT1G75840.1 | Symbols: ARAC5, ATGP3, ROP4, ATROP4 | RAC-like GT... 1066 0.0
AT1G20090.1 | Symbols: ARAC4, ROP2, ATROP2, ATRAC4 | RHO-relate... 795 0.0
AT3G51300.1 | Symbols: ARAC11, ROP1, ROP1AT, ATRAC11, ATROP1 | ... 431 4e-120
> AT1G75840.1 | Symbols: ARAC5, ATGP3, ROP4, ATROP4 | RAC-like
GTP binding protein 5 | chr1:28475707-28477802 FORWARD LENGTH=1273
Length=1273
Score = 1066 bits (577), Expect = 0.0
Identities = 612/629 (97%), Gaps = 1/629 (0%)
Strand=Plus/Plus
Query 1 TTTGTGAAATTTGCGGCGGAGATGAGTGCTTCGAGGTTTATAAAGTGTGTCACCGTCGGC 60
|||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 TTTGTG-AATTTGCTGCGGAGATGAGTGCTTCGAGGTTTATAAAGTGTGTCACCGTCGGC 296
Query 61 GATGGTGCCGTCGGAAAAACCTGTATGCTGATTTCTTACACAAGCAACACTTTCCCTACG 120
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 297 GATGGTGCCGTCGGAAAAACTTGTATGCTGATTTCTTACACAAGCAACACTTTCCCTACG 356
Query 121 GACTATGTTCCAACTGTTTTCGACAACTTCAGTGCTAATGTGGTTGTAGATGGGAACACG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 GACTATGTTCCAACTGTTTTCGACAACTTCAGTGCTAATGTGGTTGTAGATGGGAACACG 416
Query 181 GTGAATCTTGGATTGTGGGATACAGCTGGTCAAGAAGACTATAACAGGTTAAGACCGTTG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 GTGAATCTTGGATTGTGGGATACAGCTGGTCAAGAAGACTATAACAGGTTAAGACCGTTG 476
Query 241 AGTTACCGTGGTGCCGATGTCTTCATTCTTGCATTCTCCCTTATTAGCAAGGCTAGCTAT 300
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 477 AGTTACCGTGGTGCCGATGTCTTCATTCTTGCATTCTCGCTTATTAGCAAAGCTAGCTAC 536
Query 301 GAGAATGTAGCCAAGAAGTGGATTCCTGAGCTCAGGCATTATGCCCCTGGTGTTCCTATA 360
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 537 GAGAATGTAGCCAAGAAGTGGATTCCTGAGCTTAGGCATTATGCCCCTGGTGTTCCTATA 596
Query 361 ATCCTTGTTGGAACAAAACTCGATCTTCGAGATGACAAGCAGTTCTTCATAGACCATCCT 420
||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 597 ATCCTCGTTGGAACGAAACTCGATCTTCGAGATGACAAGCAATTCTTCATAGACCATCCT 656
Query 421 GGTGCAGTGCCGATTACTACAAACCAGGGAGAGGAATTAAAGAAACTGATAGGATCTCCA 480
||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 657 GGTGCAGTGCCTATTACTACAAACCAGGGAGAGGAACTAAAGAAACTGATAGGATCACCA 716
Query 481 ATCTACATTGAATGTAGTTCAAAGACGCAGCAGAATGTGAAAGCAGTCTTTGACGCAGCC 540
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 717 ATCTACATTGAATGTAGTTCAAAGACTCAGCAGAATGTGAAAGCAGTCTTTGACGCAGCC 776
Query 541 ATAAAAGTGGTGCTTCAGCCACCGAAACAGAAGAAGAAGAAAAAGAATAAGAACCGCTGT 600
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 777 ATAAAAGTGGTGCTTCAGCCACCGAAACAGAAGAAGAAGAAAAAGAACAAGAACCGCTGC 836
Query 601 GTGTTCTTGTGATCGAACATCTTTTAAAA 629
|||||||||||||||||||||| ||||||
Sbjct 837 GTGTTCTTGTGATCGAACATCTCTTAAAA 865
> AT1G20090.1 | Symbols: ARAC4, ROP2, ATROP2, ATRAC4 | RHO-related
protein from plants 2 | chr1:6966922-6968933 FORWARD LENGTH=1219
Length=1219
Score = 795 bits (430), Expect = 0.0
Identities = 547/604 (91%), Gaps = 5/604 (1%)
Strand=Plus/Plus
Query 11 TTGCGGCGGAGATGAGTGCTTCGAGGTTTATAAAGTGTGTCACCGTCGGCGATGGTGCCG 70
||||||| ||||| | || || ||||||||||||||||| |||||||| ||||||||||
Sbjct 291 TTGCGGCAGAGAT--G-GCGTCAAGGTTTATAAAGTGTGTGACCGTCGGAGATGGTGCCG 347
Query 71 TCGGAAAAACCTGTATGCTGATTTCTTACACAAGCAACACTTTCCCTACGGACTATGTTC 130
|||||||||| || ||||| ||||||||||| ||||| ||||| ||||| || ||||| |
Sbjct 348 TCGGAAAAACTTGCATGCTCATTTCTTACACTAGCAATACTTTTCCTACTGATTATGTGC 407
Query 131 CAACTGTTTTCGACAACTTCAGTGCTAATGTGGTTGTAGATGGGAACACGGTGAATCTTG 190
||||||||||||||||||||||||||||||||||||| ||||| ||||| || |||||||
Sbjct 408 CAACTGTTTTCGACAACTTCAGTGCTAATGTGGTTGTTGATGGCAACACTGTCAATCTTG 467
Query 191 GATTGTGGGATACAGCTGGTCAAGAAGACTATAACAGGTTAAGACCGTTGAGTTACCGTG 250
||||||||||||| ||||||||||| ||||| ||||||||| |||| |||||||||||||
Sbjct 468 GATTGTGGGATACTGCTGGTCAAGAGGACTACAACAGGTTACGACCTTTGAGTTACCGTG 527
Query 251 GTGCCGATGTCTTCATTCTTGCATTCTCCCTTATTAGCAAGGCTAGCTATGAGAATGTAG 310
|||| ||||| ||||||||||| ||||| ||||||||||||||||||||||||||| |||
Sbjct 528 GTGCTGATGTTTTCATTCTTGCTTTCTCTCTTATTAGCAAGGCTAGCTATGAGAATATAG 587
Query 311 CCAAGAAGTGGATTCCTGAGCTCAGGCATTATGCCCCTGGTGTTCCTATAATCCTTGTTG 370
|||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||
Sbjct 588 CCAAGAAGTGGATTCCTGAGCTCAGGCATTATGCTCCTGGTGTTCCCATTATCCTTGTTG 647
Query 371 GAACAAAACTCGATCTTCGAGATGACAAGCAGTTCTTCATAGACCATCCTGGTGCAGTGC 430
| ||||||||||||||||||||||||||||| ||||| ||||| ||||||||||| ||||
Sbjct 648 GGACAAAACTCGATCTTCGAGATGACAAGCAATTCTTTATAGATCATCCTGGTGCTGTGC 707
Query 431 CGATTACTACAAACCAGGGAGAGGAATTAAAGAAACTGATAGGATCTCCAATCTACATTG 490
| |||||||||||||||||||||||| | ||||||||||| |||||| | |||||||||
Sbjct 708 CAATTACTACAAACCAGGGAGAGGAACTGAAGAAACTGATTGGATCTGCTGTCTACATTG 767
Query 491 AATGTAGTTCAAAGACGCAGCAGAATGTGAAAGCAGTCTTTGACGCAGCCATAAAAGTGG 550
|||||||||||||||| |||||||| ||||| ||||| ||||| ||||| ||||||||||
Sbjct 768 AATGTAGTTCAAAGACACAGCAGAACGTGAAGGCAGTGTTTGATGCAGCTATAAAAGTGG 827
Query 551 TGCTTCAGCCACCGAAA-CAGAAGAAGAAGAAAAAGAATAAGAACCGCTGTGTGTTCTTG 609
||||||||||||| ||| ||||||||||||||||||||||||||||| || | |||||||
Sbjct 828 TGCTTCAGCCACC-AAAGCAGAAGAAGAAGAAAAAGAATAAGAACCGTTGCGCGTTCTTG 886
Query 610 TGAT 613
||||
Sbjct 887 TGAT 890
> AT3G51300.1 | Symbols: ARAC11, ROP1, ROP1AT, ATRAC11, ATROP1
| RHO-related protein from plants 1 | chr3:19042887-19044372
FORWARD LENGTH=1061
Length=1061
Score = 431 bits (233), Expect = 4e-120
Identities = 471/585 (81%), Gaps = 20/585 (3%)
Strand=Plus/Plus
Query 7 AAA-TTTGCGGCGGAGATGAGTGCTTCGAGGTTTATAAAGTGTGTCACCGTCGGCGATGG 65
||| |||| || ||| ||||| ||||||||||| ||||||| || || || || |||||
Sbjct 296 AAACTTTGAGG-GGAAATGAGCGCTTCGAGGTTCGTAAAGTGCGTGACGGTTGGTGATGG 354
Query 66 TGCCGTCGGAAAAACCTGTATGCTGATTTCTTACACAAGCAACACTTTCCCTACGGACTA 125
|| ||||||||||| ||| || |||||||||||||||||||||||||||||||||| ||
Sbjct 355 AGCTGTCGGAAAAACTTGTTTGTTGATTTCTTACACAAGCAACACTTTCCCTACGGATTA 414
Query 126 TGTTCCAACTGTTTTCGACAACTTCAGTGCTAATGTGGTTGT-AGATGGGAA-CACGGTG 183
||| || || |||||||| || |||||||| ||||| || || | |||| || ||| |||
Sbjct 415 TGTGCCTACCGTTTTCGATAATTTCAGTGCCAATGTTGTGGTTA-ATGG-AAGCACTGTG 472
Query 184 AATCTTGGATTGTGGGATACAGCTGGTCAAGAAGACTATAACAGGTTAAGACCGTTGAGT 243
||||||||||||||||| || || || ||||| || || || || |||||||| |||||
Sbjct 473 AATCTTGGATTGTGGGACACTGCAGGGCAAGAGGATTACAATAGATTAAGACCACTGAGT 532
Query 244 TACCGTGGTGCCGATGTCTTCATTCTTG-CATTCTCCCTTATTAGCAAGGCTAGCTATGA 302
|||||||| || ||||| |||||| ||| | ||||| ||||| || || || || |||||
Sbjct 533 TACCGTGGAGCAGATGTTTTCATT-TTGGCCTTCTCTCTTATCAGTAAAGCCAGTTATGA 591
Query 303 GAATGTAGCCAAGAAGTGGATTCCTGAGCTCAGGCATTATGCCCCTGGTGTTCCTATAAT 362
|| || |||| |||||||| || ||| | | ||||| || |||||||| || || |
Sbjct 592 AAACGTCTCCAAAAAGTGGATCCCGGAGTTGAAACATTACGCGCCTGGTGTCCCCATCGT 651
Query 363 CCTTGTTGGAACAAAACTCGATCTTCGAGATGACAAGCAGTTCTTCATAGACCATCCTGG 422
||||||||||||||| || |||||||||||||| || |||||||| || |||||||||||
Sbjct 652 CCTTGTTGGAACAAAGCTTGATCTTCGAGATGATAAACAGTTCTTTATCGACCATCCTGG 711
Query 423 TGCAGTGCCGATTACTACAAAC-CAGGGAGAGGAATTAAAGAAACTGATAGGATCTCCAA 481
||| || ||||||||||| | ||||||||||| | | ||| | |||||| | || |
Sbjct 712 TGCTGTTCCGATTACTACTG-CTCAGGGAGAGGAGCTGAGGAAGCAAATAGGAGCACCTA 770
Query 482 TCT-ACATTGAATGTAGTTC-AAAGACGCA-GCAGAATGTGAAAGCAGTCTTTGACGCAG 538
|| |||| ||||| ||||| ||| || || | |||||||||| || || ||||||||||
Sbjct 771 -CTTACATCGAATGCAGTTCCAAA-ACTCAAG-AGAATGTGAAGGCGGTGTTTGACGCAG 827
Query 539 CCATAAAAGTGGTGCTT-CAGCCACCGAAA-CAGAAGAAGAAGAA 581
|||| ||||||| || || || || ||| ||||||||||||||
Sbjct 828 CCATCCGAGTGGTG-TTGCAACCGCC-AAAGCAGAAGAAGAAGAA 870
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30492127229
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5