BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926990
Length=730
Score E
Sequences producing significant alignments: (Bits) Value
AT1G76020.1 | Symbols: | Thioredoxin superfamily protein | chr... 1062 0.0
> AT1G76020.1 | Symbols: | Thioredoxin superfamily protein | chr1:28532097-28533567
REVERSE LENGTH=849
Length=849
Score = 1062 bits (575), Expect = 0.0
Identities = 679/729 (93%), Gaps = 7/729 (1%)
Strand=Plus/Plus
Query 1 AAAGTGTGAGCT-AGAGAATAATGATTCGAACGATTTTGGTGTTCATTGTCGTCGTCGTC 59
|||||||||| | ||||||||||||||||| || || | ||||| ||||| |||||||
Sbjct 6 AAAGTGTGAG-TCAGAGAATAATGATTCGAGCGGTTCTCCTGTTCCTTGTCTTCGTCGT- 63
Query 60 ACTGAGACGCGAGTACAAGCGCAGCTAGTGCCGCCCGTGAGGCAAGATGGTTTCGTTTAC 119
||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 64 --TGAGACGAGAGTACAAGCGCAGCTAGTGCCGCCGGTGAGGCAAGATGGTTTCGTTTAC 121
Query 120 CCACCGGGTCATCGTTTTGACCCGGATACTATACTAATTGAGGCGTATTTTGACCCGGTT 179
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 122 CCACCGGGTCATCGTTTCGACCCGGATACTATACTAATTGAGGCGTATTTTGACCCGGTT 181
Query 180 TGCCCGGACAGTAGAGACTCTTGGCCGCCTCTGAAGCAAGCTCTTCATCACTATGGATCT 239
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 182 TGCCCGGACAGTAGAGACTCTTGGCCGCCACTGAAGCAAGCTCTTCATCACTATGGATCT 241
Query 240 CGCGTTGCCCTTCTCCTCCATCTCCTTCCTTTACCCTACCATGACAATGCATATGTAACC 299
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 242 CGCGTTGCCCTTCTCCTCCATCTCCTTCCTTTACCCTACCATGACAATGCCTATGTAACA 301
Query 300 TCTCGGGCCTTACACATTGTGAATACCGTAAACGCCAATGCTACTTTCAGTTTACTGGAA 359
|| ||||||||||||||||||||||||||| ||||||||||||| |||||||| ||||||
Sbjct 302 TCACGGGCCTTACACATTGTGAATACCGTACACGCCAATGCTACCTTCAGTTTGCTGGAA 361
Query 360 GGGTTCTTCAAGCATCAGCCATTGTTCTACAATGCGCAAACA-ATCCACCTGACAAGAGC 418
|||||||||||||||||| ||||||| ||||| ||||||||| | | ||| ||||| |
Sbjct 362 GGGTTCTTCAAGCATCAGTCATTGTTTTACAACGCGCAAACACAACT-CCTTTCAAGACC 420
Query 419 TGCAGTTGTGGAGAAAATAGTCGAACTTGGAACAGTCACGTTGGGAAAGTCATATCAATC 478
||||||||||||||||||||||||||||||||||||| ||||||| || |||||||||||
Sbjct 421 TGCAGTTGTGGAGAAAATAGTCGAACTTGGAACAGTCTCGTTGGGGAACTCATATCAATC 480
Query 479 GGTCCTCAAATCCGGCTTCAGCGACAAAAAATCGGATCGTGCTACCAGGGTTTCCTTCAA 538
||| || ||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 481 GGTTCTTAAATCCGGCTTCAGCGACAAAAAATCGGATCGTGCAACCAGAGTTTCCTTCAA 540
Query 539 GTATAGCGGTTCAAGAGGGGTTTATGGGACACCAACCTTCTACGTTAACGGGTTTGTATT 598
|||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 541 GTATAGCGCTTCAAGAGGGGTTTATGGTACACCAACCTTCTACGTTAACGGGTTTGTATT 600
Query 599 GTCTGATGCTGCTTCCCCCTCAAACTTTGGAGGATGGaaaaaaaTCATTGACCCTCTGGT 658
|||||||||||||||||| ||||| |||||||||||||| ||||||||||| ||||||||
Sbjct 601 GTCTGATGCTGCTTCCCCTTCAAATTTTGGAGGATGGAAGAAAATCATTGATCCTCTGGT 660
Query 659 TCAAGCACATAAGGTGGAAGATAACTTCATTCCCTACCTTCGAAGATCTTAAGTGCTTTT 718
|||||||||| || ||||||||||||||||||||| |||| |||||| ||||||||||||
Sbjct 661 TCAAGCACATGAGATGGAAGATAACTTCATTCCCTTCCTTTGAAGATTTTAAGTGCTTTT 720
Query 719 GCTGTGTCA 727
|||||||||
Sbjct 721 GCTGTGTCA 729
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35415073635
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5