BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926998
Length=949
Score E
Sequences producing significant alignments: (Bits) Value
AT1G76080.1 | Symbols: ATCDSP32, CDSP32 | chloroplastic drought... 1447 0.0
> AT1G76080.1 | Symbols: ATCDSP32, CDSP32 | chloroplastic drought-induced
stress protein of 32 kD | chr1:28547786-28549419
REVERSE LENGTH=1257
Length=1257
Score = 1447 bits (783), Expect = 0.0
Identities = 895/949 (94%), Gaps = 8/949 (1%)
Strand=Plus/Plus
Query 1 ATCCTACACACACT--CTC--ACGATGGCCACCGTCGCTAACTTCTTAGCCAAACCAATC 56
|||| ||||||||| | | || ||||||||||||||||||||||||||||||||||||
Sbjct 48 ATCCCACACACACTACCACAAACAATGGCCACCGTCGCTAACTTCTTAGCCAAACCAATC 107
Query 57 GCCACCGTAGTCCCACGGCCTTCCTCCGCCGTTGCTTCAACCTCCTCCTTCGTATTCTTT 116
||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 108 TCCACCGTAGTCCCACGGCCATCCTCCGCCGTTGCTTCGACCTCCTCCTTCGTATTCTTT 167
Query 117 AACCATAAAACCAACT-CTCTGTTCCGGAGGGAAAACCTCCCGAAAAGACTATTCTCGGC 175
||||||||||| || | |||||||||||||| ||||||||||||||||| ||||||| ||
Sbjct 168 AACCATAAAACTAA-TCCTCTGTTCCGGAGGAAAAACCTCCCGAAAAGATTATTCTCCGC 226
Query 176 TGTGAAAGTGAAGGCCGGAGCGGCGTCTCCGGGGAAGGTGGGTACACCCCCGGCGAAAGA 235
|||||| | ||||| ||||||||||||||||| |||||||||||||| |||||||| ||
Sbjct 227 CGTGAAAATAAAGGCTGGAGCGGCGTCTCCGGGAAAGGTGGGTACACCACCGGCGAATGA 286
Query 236 CGAGAAGGTACAAAAGATTCACAGCGGAGAGGAATTCGACG-AGGCGTTGAAAAATGCAA 294
||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |
Sbjct 287 CGAGAAGGTACAAAAGATTCACAGCGGAGAGGAATTCGACGTA-GCGTTGAAAAATGCGA 345
Query 295 AGAGCAAACTTGTGGTTGCGGAGTTTGCTACGAGTAAGAGTGATCAGAGTAATAAGATAT 354
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 346 AGAGCAAACTCGTGGTTGCAGAGTTTGCTACGAGTAAGAGTGATCAGAGTAATAAGATAT 405
Query 355 ATCCGTTTATGGTGGAACTGAGCAGGACCTGTAACGACGTCGTTTTCTTGCTCGTCATGG 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 406 ATCCGTTTATGGTGGAACTGAGCAGGACCTGTAACGACGTCGTTTTCTTGCTCGTCATGG 465
Query 415 GTGATGAGTCTGACAAAACCAGAGAACTCTGTCGGAGAGAGAAGATTGAGAAAGTTCCTC 474
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 466 GTGATGAATCTGACAAGACCAGAGAACTCTGTCGGAGAGAGAAGATTGAGAAAGTTCCTC 525
Query 475 ACTTTAGCTTTTATAAGAGCATGGAGAAAATACACGAGGAAGAAGGTATTGAACCGGACC 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 526 ACTTTAGCTTTTATAAGAGCATGGAGAAAATACACGAGGAAGAAGGTATTGAACCGGACC 585
Query 535 AGTTAATGGGAGACGTTCTATACTACGGAGACAACCACTCAGCGGTGGTGCAGCTGCACG 594
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 586 AGTTAATGGGAGACGTTCTATACTACGGAGACAACCACTCTGCGGTGGTGCAGCTGCACG 645
Query 595 GTCGAGCTGACGTGGAGAAGCTAATCGACGAGAATCGCACCGGAGGCAAGCTGATTGTGC 654
| ||| |||||||||| ||||| ||||||||||||||||| |||||||||||||| ||||
Sbjct 646 GCCGACCTGACGTGGAAAAGCTGATCGACGAGAATCGCACTGGAGGCAAGCTGATCGTGC 705
Query 655 TCGATGTCGGTCTGAAACATTGTGGTCCTTGCGTTAAGGTGTATCCGACCGTGCTGAAAC 714
| || || ||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 706 TTGACGTTGGTCTAAAACATTGTGGTCCTTGCGTTAAAGTGTATCCGACCGTGCTGAAAC 765
Query 715 TGTCCCGGTCAATGTCGGAGACAGTCGTATTCGCTAGAATGAATGGTGACGAGAACGATA 774
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 766 TGTCCCGGTCAATGTCCGAGACAGTCGTATTCGCTAGAATGAACGGTGACGAGAACGATA 825
Query 775 GTTGTATGGAGTTTCTCAAGGACATGAATGTGATTGAAGTTCCAACTTTCTTATTCATTA 834
||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||
Sbjct 826 GTTGTATGGAGTTTCTCAAGGACATGAATGTTATCGAAGTTCCAACTTTCTTGTTCATTA 885
Query 835 GAGATGGAGATATTTGTGGCCGATATGTTGGTTCCGGTAAAGGAGAACTCATCGGAGAGA 894
|||| || || ||| ||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 886 GAGACGGCGAGATTCGTGGCCGTTATGTTGGTTCCGGTAAAGGAGAACTCATTGGAGAGA 945
Query 895 TTCTTCGGTACTCAGGTGTTCGTGTCACTTATTAATTTGTATCAAAACT 943
|||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 946 TTCTTCGGTACTCAGGCGTTCGTGTCACTTATTAATTTGTATCAAAACT 994
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46416351828
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5