BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926999
Length=1123
Score E
Sequences producing significant alignments: (Bits) Value
AT1G76090.1 | Symbols: SMT3 | sterol methyltransferase 3 | chr1... 1720 0.0
AT1G20330.1 | Symbols: SMT2, CVP1, FRL1 | sterol methyltransfer... 857 0.0
> AT1G76090.1 | Symbols: SMT3 | sterol methyltransferase 3 | chr1:28550409-28551781
REVERSE LENGTH=1373
Length=1373
Score = 1720 bits (931), Expect = 0.0
Identities = 1049/1107 (95%), Gaps = 4/1107 (0%)
Strand=Plus/Plus
Query 18 AAAGAAATGGACTCGGTGGCTCTCTACTGCACGGCTGGTCTCATCGCCGGCGCCCTCTAC 77
||| |||||||||||||||||||||||||||| ||||||||||| ||||||||| |||||
Sbjct 106 AAA-AAATGGACTCGGTGGCTCTCTACTGCACCGCTGGTCTCATTGCCGGCGCCGTCTAC 164
Query 78 TGGTTCATATGTGTCTTAGGTCCAGCAGAGCGAAAGGGCAAACGAGCCT-TAGATCTCTC 136
||||||||||| ||| ||||||||||||| ||||| ||||||||||||| | ||||||||
Sbjct 165 TGGTTCATATGCGTCCTAGGTCCAGCAGAACGAAAAGGCAAACGAGCCTCT-GATCTCTC 223
Query 137 CGGCGGCTCAATCAACGCCGAGAACGTCAAAGACAACTATAACCAATACTGGTCTTTCTT 196
||||||||||||| ||| || || |||||||||||||||||||||||||||||||||||
Sbjct 224 CGGCGGCTCAATCTCCGCAGAAAAAGTCAAAGACAACTATAACCAATACTGGTCTTTCTT 283
Query 197 CCGCCGACCAAAAGAGATCGAAACCGCCGAGAAAGTTCCTGACTTCGTCGACACGTTCTA 256
|||| |||||||||||||||| | ||||||||||| |||||||||||||||||||||||
Sbjct 284 CCGCAAACCAAAAGAGATCGAATCAGCCGAGAAAGTACCTGACTTCGTCGACACGTTCTA 343
Query 257 CAATCTCGTAACCGATATCTACGAGTGGGGATGGGGACAATCTTTCCATTTCTCTCCTCA 316
|||||| || || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 344 CAATCTTGTCACTGATATCTACGAGTGGGGATGGGGACAATCTTTCCATTTCTCTCCTCA 403
Query 317 TATCCCCGGAAAATCCCACAAAGACGCCACAAGGATCCACGAAGAAATGGCCGTCGATCT 376
| |||| ||||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 404 TGTCCCTGGAAAATCCGACAAAGACGCCACAAGAATCCACGAAGAAATGGCCGTCGATCT 463
Query 377 CATCAACGTGAAACCTGGACAAAAGATCCTCGACGCTGGTTGCGGCGTTGGTGGGCCGAT 436
|||||| |||||||| ||||||||||| || ||||||||||||||||| |||||||||||
Sbjct 464 CATCAAAGTGAAACCGGGACAAAAGATTCTTGACGCTGGTTGCGGCGTGGGTGGGCCGAT 523
Query 437 GAGAGCCATCGCGGCCCATTCCAAGGCCCAAGTCACTGGAATCACCATCAACGAGTACCA 496
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 524 GAGAGCCATCGCGGCCCATTCCAAGGCCCAAGTCACTGGAATCACTATCAACGAGTACCA 583
Query 497 AGTGCAACGAGCCAAGCTTCACAACAAGAAAGCTGGACTTGATTCTCTTTGCAACGTCGT 556
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 584 AGTGCAACGAGCCAAGCTTCACAACAAGAAAGCTGGACTTGATTCTCTCTGCAACGTCGT 643
Query 557 TTGCGGTAACTTTTTAAAGATGCCGTTCGATGAAAACACGTTCGACGGCGCTTACTCGAT 616
||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 644 TTGTGGTAACTTTTTAAAGATGCCGTTCGATGAAAACACGTTTGACGGAGCTTACTCGAT 703
Query 617 CGAAGCCACGTGTCACGCTCCTAAACTAGAAGAAGTATACTCAGAGATCTTCAGAGTGAT 676
|||||| ||||||||||||||||| || |||||||||||||| |||||||||||||||||
Sbjct 704 CGAAGCTACGTGTCACGCTCCTAAGCTCGAAGAAGTATACTCGGAGATCTTCAGAGTGAT 763
Query 677 GAAACCAGGATCTTTGTTCGTGTCCTACGAGTGGGTCACCACTGAGAAATACAGAGACGA 736
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 764 GAAACCAGGATCTTTGTTCGTGTCCTACGAATGGGTCACCACTGAAAAATACAGAGACGA 823
Query 737 GGATGAAGAACACAAGGACGTGATTCAAGGGATCGAGAGAGGAGACGCACTTCCTGGACT 796
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 824 TGACGAAGAACACAAGGACGTGATTCAAGGGATCGAGAGAGGAGACGCACTTCCTGGACT 883
Query 797 AAGAAGCTACAAAGATATCGCTGCGACGGCGAAGAAAGTTGGGTTTGAGGTTGTCAAGGA 856
|||||||||| ||||| || | ||||||||||||||||||||||||||| || |||||
Sbjct 884 AAGAAGCTACGCTGATATAGCCGTGACGGCGAAGAAAGTTGGGTTTGAGGTAGTGAAGGA 943
Query 857 GAAAGATTTGGCTAAACCACCGTCTAAACCGTGGTGGAACCGGTTAAAGATGGGAAGGCT 916
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 944 GAAAGATTTGGCTAAACCACCGTCTAAACCGTGGTGGAACCGGTTAAAGATGGGAAGGAT 1003
Query 917 TGCTTATTGGAGAAACCATGTCGTGGTTGTGATTCTTTCTGCTATTGGGGTTGCTCCTAA 976
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1004 TGCTTATTGGAGAAACCATGTTGTGGTTGTGATTCTTTCTGCTATTGGGGTTGCTCCTAA 1063
Query 977 AGGAACTGTTGATGTTCATAAGATGTTGTTTAAGACTGCTGATTATTTGACCAGAGGTGG 1036
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1064 AGGAACTGTTGATGTTCATAAGATGTTGTTTAAGACTGCTGATTATTTGACCAGAGGTGG 1123
Query 1037 TGAGACTGGAATCTTCTCGCCGATGCATATGATTCTCTGTAGAAAACCAGAGAAAGCTTC 1096
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1124 TGAGACTGGAATCTTCTCTCCGATGCATATGATTCTCTGTAGAAAACCAGAGAAAGCTTC 1183
Query 1097 TGAATGAATGAATGAGAATCTTCCTTC 1123
||||||||||| ||||||||||| |||
Sbjct 1184 TGAATGAATGATTGAGAATCTTC-TTC 1209
> AT1G20330.1 | Symbols: SMT2, CVP1, FRL1 | sterol methyltransferase
2 | chr1:7038688-7040159 REVERSE LENGTH=1472
Length=1472
Score = 857 bits (464), Expect = 0.0
Identities = 888/1089 (82%), Gaps = 44/1089 (4%)
Strand=Plus/Plus
Query 22 AAATGGACTCGGTGGCTCTCTACTGCA-CGGCTGGTCTCATCGCCGGCGCCCTCTACTGG 80
|||||||||| | | |||| || || ||| || ||| |||||| || ||||||||
Sbjct 105 AAATGGACTCTTTAACACTCTTCTTCACCGG-TGCACTCGTCGCCGTCGGTATCTACTGG 163
Query 81 TTCATATGTG-TCTTAGGTCCAGCAGAGCG-AAAGGGCAAACGAGCCTTAGATCTCTCCG 138
||| | || | || | |||||||||||||| ||| |||||||||||| |||||||||| |
Sbjct 164 TTCCTCTGCGTTC-TCGGTCCAGCAGAGCGTAAA-GGCAAACGAGCCGTAGATCTCTCTG 221
Query 139 GCGGCTCAATCAACGCCGAGAACGTCAAAGACAACTATAACCAATACTGGTCTTTCTTCC 198
| ||||||||| ||||||||| ||| |||||||||| || || ||||||||||||||||
Sbjct 222 GTGGCTCAATCTCCGCCGAGAAAGTCCAAGACAACTACAAACAGTACTGGTCTTTCTTCC 281
Query 199 GCCGACCAAAAGAGATCGAAACCGCCGAGAAAGTTCCTGACTTCGTCGACACGTTCTACA 258
|||| |||||||| ||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 282 GCCGTCCAAAAGAAATCGAAACCGCCGAGAAAGTTCCAGACTTCGTCGACACATTCTACA 341
Query 259 ATCTCGTAACCGATATCTACGAGTGGGGATGGGGACAATCTTTCCATTTCTCTCC-TCAT 317
||||||| ||||| || ||||||||||||||||||||||| ||||| ||||| || |||
Sbjct 342 ATCTCGTCACCGACATATACGAGTGGGGATGGGGACAATCCTTCCACTTCTCACCATCA- 400
Query 318 ATCCCCGGAAAATCCCACAAAGACGCCACAAGGATCCACGAAGAAATGGCCGTCGATCTC 377
|||||||||||||| |||||||||||||| | |||||||||| |||||||| |||||
Sbjct 401 ATCCCCGGAAAATCTCACAAAGACGCCACGCGCCTCCACGAAGAGATGGCCGTAGATCTG 460
Query 378 AT-CAACGTGAAACCTGGACAAAAGATCCTCGACGCT-GGTTGCGGCGTTGGTGGGCCGA 435
|| ||| || |||||||| ||||||||||| |||| | || ||||| || || || ||||
Sbjct 461 ATCCAA-GTCAAACCTGGTCAAAAGATCCTAGACG-TCGGATGCGGTGTCGGCGGTCCGA 518
Query 436 TGAGAGCCATCGCGGCCCATTC-CAAGGCCCAA-GTCACT-GGAATCACCATCAACGAGT 492
|| |||| || || | || || | | | | || || | | || || || || |||||||
Sbjct 519 TGCGAGCGATTGCATCTCACTCGCGA-G-CTAACGT-AGTCGGGATTACAATAAACGAGT 575
Query 493 ACCAAGTGCAAC-GAGCCAAG-CTTCACAACAAGAAAGCTGGACTTGATTCTCTTTGCAA 550
| || ||| ||| ||| | | || ||||| ||||||||||| || || | |||||| |
Sbjct 576 ATCAGGTG-AACAGAG-CTCGTCTCCACAATAAGAAAGCTGGTCTCGACGCGCTTTGCGA 633
Query 551 CGTCGTTTGCGGTAACTTTTTAAAGATGCCGTTCGATGAAAACACG-TTCGACGGCGCTT 609
||||| || |||||||| | |||||||||||||||| |||| | |||||||| ||||
Sbjct 634 GGTCGTGTGTGGTAACTTCCTCCAGATGCCGTTCGATGACAACA-GTTTCGACGGTGCTT 692
Query 610 ACTCGATCGAAGCCACGTGTCACGCTCCTAAACTAGAAGAAGTATACTCAGAGATCTTCA 669
| || |||||||||||||||||||| || || || |||||||| ||| ||||||||| ||
Sbjct 693 ATTCCATCGAAGCCACGTGTCACGCGCCGAAGCTGGAAGAAGTGTACGCAGAGATCTACA 752
Query 670 GAGTGATGAAACCAGGATCTTTGT-TCGTGTCCTACGAGTGGGTCACCACTGAGAAATAC 728
| ||| ||||||| |||||| ||| | ||||| ||||||||||| || || |||||||
Sbjct 753 GGGTGTTGAAACCCGGATCTATGTAT-GTGTCGTACGAGTGGGTTACGACGGAGAAATTT 811
Query 729 AGAGAC-GAGGATGAAGAACACAAGGACGTGATTCAAGGGATCGAGAGAGGAGACGCACT 787
| || | |||||||| |||||| ||| || || |||||||| |||||||| || || |
Sbjct 812 A-AGGCGGAGGATGACGAACACGTGGAGGTAATCCAAGGGATTGAGAGAGGCGATGC-GT 869
Query 788 T-CCTGGACTAAGAAGC-TACAAAGATATCGCTGCGACGGCGAAGAAA-GTTGGGTTTGA 844
| || || || || || ||| ||||| |||| |||||| || ||| |||||||||||
Sbjct 870 TACCAGGGCTTAG-GGCTTACGTGGATATAGCTGAGACGGCTAA-AAAGGTTGGGTTTGA 927
Query 845 GGTTGTCAAGGAGAAAGATTTGGCTAAACCACCGTCTAAACCGTGGTGGAAC-CGG-TTA 902
| | || |||||||| ||| |||| | |||||| || | ||||||||| || || ||
Sbjct 928 GATAGTGAAGGAGAAGGATCTGGCGAGTCCACCGGCTGAGCCGTGGTGG-ACTAGGCTT- 985
Query 903 AAGATGGGAAGGCTTGCTTATTGGA-GAAAC-CATGTCGTGGTTGTGATTCTT-TCTGCT 959
|||||||| |||||||||||||||| ||| | ||| | |||||| |||| || || ||
Sbjct 986 AAGATGGGTAGGCTTGCTTATTGGAGGAATCACAT-T-GTGGTTCAGATT-TTGTCAGCG 1042
Query 960 ATTGGGGTTGCTCCTAAAGGAACTGTTGATGTTCATAAGATGTTGTTTAAGACTGCTGAT 1019
|||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1043 GTTGGAGTTGCTCCTAAAGGAACTGTTGATGTTCATGAGATGTTGTTTAAGACTGCTGAT 1102
Query 1020 TATTTGACCAGAGGTGGTGAGACTGGAATCTTCTCGCCGATGCATATGATTCTCTGTAGA 1079
|||||||||||||| ||||| || ||||| ||||| |||||||||||||||||||| |||
Sbjct 1103 TATTTGACCAGAGGAGGTGAAACCGGAATATTCTCTCCGATGCATATGATTCTCTGCAGA 1162
Query 1080 AAACCAGAG 1088
||||| |||
Sbjct 1163 AAACCGGAG 1171
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55069997865
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5