BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg927005

Length=499
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G37210.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like s...   545    1e-154


> AT4G37210.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like 
superfamily protein | chr4:17512259-17514625 FORWARD LENGTH=1800
Length=1800

 Score =  545 bits (295),  Expect = 1e-154
 Identities = 360/390 (92%), Gaps = 9/390 (2%)
 Strand=Plus/Plus

Query  75   CTATCGATATGGAACAGCTCTCCTGG-AAAGGCTCAAGCTGAAGCTGATCCACTTGGTAA  133
            |||||||||||||  ||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct  492  CTATCGATATGGATTAGCTCTCCTGGCAAAGGCTCAAGCTGAAGCTGATCCACTTGGGAA  551

Query  134  CATACCCAAGAAAGAAGGCGAAGTTCAGCAGGAGTCCAGCAATGGTGAATCTTTGGCTCC  193
            ||| || ||||||||||| ||||||||||| ||||||||||||||||||||  |||||||
Sbjct  552  CATGCCTAAGAAAGAAGGTGAAGTTCAGCAAGAGTCCAGCAATGGTGAATCGCTGGCTCC  611

Query  194  AACTGTTGTTTCTA-GTGACCCAGAGAGACAAGGGAGTTCAAGTGGGCAAGAAGGTTCTG  252
              |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  612  TTCTGTTGTTTC-AGGTGACCCAGAGAGACAAGGGAGTTCAAGTGGGCAAGAAGGTTCTG  670

Query  253  GTGGTAAAGACCAAGGAGAGGATGGTGAAGATTGTCAAGATGATGACCTATCTGATGCTG  312
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  671  GTGGTAAAGACCAAGGAGAGGATGGTGAAGATTGTCAAGATGATGACCTATCTGATGCTG  730

Query  313  ATG------CTGATGAAGATGAGTCTGATTTGGATATGGCCTGGAAAATGCTGGACATTG  366
            |||      |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  731  ATGGTGATGCTGATGAAGATGAGTCTGATTTGGATATGGCCTGGAAAATGCTGGACATTG  790

Query  367  CAAGGGCTATTACTGACAAACAGCCTACTGATACAATGGAAAAATTTGATATACTCTGTT  426
            | |||| |||||||||||||||| ||||||| |||||||||||| | |||||||||||||
Sbjct  791  CTAGGGTTATTACTGACAAACAGTCTACTGAGACAATGGAAAAAGTGGATATACTCTGTT  850

Query  427  CCCTTGCTGAAATTTCTTTGGAAAGAGAGG  456
            | ||||||||| | || |||||||||||||
Sbjct  851  CGCTTGCTGAAGTGTCCTTGGAAAGAGAGG  880


 Score = 60.2 bits (32),  Expect = 2e-08
 Identities = 32/32 (100%), Gaps = 0/32 (0%)
 Strand=Plus/Plus

Query  43   GGGTTGCACATTATGGTGAACTTGATGCTGAG  74
            ||||||||||||||||||||||||||||||||
Sbjct  446  GGGTTGCACATTATGGTGAACTTGATGCTGAG  477



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23810985678


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5