BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg927006
Length=984
Score E
Sequences producing significant alignments: (Bits) Value
AT1G76150.1 | Symbols: ECH2, ATECH2 | enoyl-CoA hydratase 2 | c... 1664 0.0
> AT1G76150.1 | Symbols: ECH2, ATECH2 | enoyl-CoA hydratase 2 |
chr1:28574740-28577700 REVERSE LENGTH=1489
Length=1489
Score = 1664 bits (901), Expect = 0.0
Identities = 954/980 (97%), Gaps = 2/980 (0%)
Strand=Plus/Plus
Query 1 GGACACGGAAGCTGAGCTTTAATCCTGATCGGAGATGGCGACTAGCGATTCTGAATTCAA 60
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 30 GGACACGGAAGCTGAGCTCTAATCCTGATCGGAGATGGCGACTAGCGATTCTGAATTCAA 89
Query 61 TTCTGATCTTCTTCTCGCTCACAAGCTTCCCGAGACGCGATACACCTACAACGAAAGAGA 120
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 90 TTCTGATCTTCTTCTCGCTCACAAGCTTCCCGAGACGCGTTACACCTACAATGAAAGAGA 149
Query 121 TGTAGCAATCTATGCTTTGGGAATCGGCGCTTGTGGCCAAGATGCTGTTGATTCCGATGA 180
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 150 TGTAGCAATCTATGCTTTGGGAATCGGCGCTTGTGGCCAAGATGCTGTGGATTCCGATGA 209
Query 181 GCTCAAGTTTGTGTATCACAGAAACGGCCAGGATTTGATCCAGGCCTTACCAACTTTTGC 240
|||||||||||||||||||||||| || |||||||||||||||| |||||||||||||||
Sbjct 210 GCTCAAGTTTGTGTATCACAGAAATGGGCAGGATTTGATCCAGGTCTTACCAACTTTTGC 269
Query 241 TTCACTATTCACACTTGGATCTTTGACAGAAGGTCTGGATTTGCCAGGTTTTAAATATGA 300
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 270 TTCACTATTCACACTTGGATCTTTGACAGAAGGACTGGATTTGCCAGGTTTTAAATATGA 329
Query 301 TCCTAGTCTCTTGTTGCATGGACAGCAGTACATTGAAATATACAGGCCATTACCTTCCAA 360
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 330 TCCTAGTCTCTTGTTGCATGGGCAGCAGTATATTGAAATATACAGGCCATTACCTTCCAA 389
Query 361 GGCTTCTTTAGTTAACAAAGTAAGCCTCGCTGGATTGCAAGATAAAGGTAAAGCAGCTAT 420
|||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 390 GGCTTCCTTAATTAACAAAGTAAGCCTCGCTGGTTTGCAAGATAAAGGTAAAGCAGCTAT 449
Query 421 CCTTGAATTAGAAACCAGAAGTTACGAGGAAGGGTCAGGGGAACTGTTATGCATGAATAG 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 450 CCTTGAATTAGAAACCAGAAGTTACGAGGAAGGGTCAGGGGAACTGTTATGCATGAATAG 509
Query 481 GACGACTGTATTT-CTAAGAGGTGCTGGTGGTTTCTCAAATTCATCTCAACCATTTTCTT 539
||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 510 GACGACTGT-TTTCCTAAGAGGTGCTGGTGGTTTCTCAAATTCATCTCAACCATTCTCTT 568
Query 540 ACAAAAACTATCCAAGTAACCAGGGCTTAGCTGTGAAAATCCCACAAAGACAACCTTTGA 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 569 ACAAAAACTATCCAAGTAACCAGGGCTTAGCTGTGAAAATCCCACAAAGACAACCTTTGA 628
Query 600 CAGTGTGGGAAGAGCGCACCCAACCATCCCAGGCATTGCTTTATAGGCTGTCTGGTGACT 659
||||||| ||||||||||| || ||||| |||||||| ||||||||||||||||||||||
Sbjct 629 CAGTGTGCGAAGAGCGCACTCAGCCATCGCAGGCATTACTTTATAGGCTGTCTGGTGACT 688
Query 660 ATAACCCTCTGCATTCAGATCCAGAATTTGCAAAACTTGCCGGATTCCCACGCCCGATAT 719
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 689 ATAATCCTCTGCATTCAGATCCAGAATTTGCAAAACTTGCCGGATTCCCACGCCCGATAT 748
Query 720 TGCATGGGCTATGCACACTCGGGTTTGCAATCAAGGCAATCATCAAGTGTGTTTGCAAGG 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 749 TGCATGGGCTATGCACACTCGGGTTTGCAATCAAGGCAATCATCAAGTGTGTTTGCAAGG 808
Query 780 GTGACCCAACTGCTGTCAAAACCATATCTGGACGATTCCTCACGACTGTTTTTCCTGGCG 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 809 GTGACCCAACTGCTGTCAAAACCATATCTGGACGATTCCTCACGACTGTTTTTCCTGGCG 868
Query 840 AAACTCTAATAACCGAAATGTGGCTTGAAGGCTTGAGGGTTATATATCAGACGAAAGTGA 899
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 869 AAACTCTGATAACCGAAATGTGGCTTGAAGGCTTGAGGGTTATATATCAGACGAAAGTGA 928
Query 900 AGGAAAGGAACAAAACCGTGTTAGCTGGTTATGTTGATATTCGCGGTTTATCTTCGTCAC 959
|||||||||||||||| |||||||||||||||||||||||||| || |||||||||||||
Sbjct 929 AGGAAAGGAACAAAACTGTGTTAGCTGGTTATGTTGATATTCGTGGGTTATCTTCGTCAC 988
Query 960 TTTAGAATGTTAGGTCCTTA 979
||||||||||||||||||||
Sbjct 989 TTTAGAATGTTAGGTCCTTA 1008
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48174546973
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5