BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg927007
Length=1667
Score E
Sequences producing significant alignments: (Bits) Value
AT1G76160.1 | Symbols: sks5 | SKU5 similar 5 | chr1:28577942-28... 2483 0.0
AT1G21860.1 | Symbols: sks7 | SKU5 similar 7 | chr1:7671028-767... 1098 0.0
> AT1G76160.1 | Symbols: sks5 | SKU5 similar 5 | chr1:28577942-28581133
REVERSE LENGTH=2008
Length=2008
Score = 2483 bits (1344), Expect = 0.0
Identities = 1561/1668 (94%), Gaps = 5/1668 (0%)
Strand=Plus/Plus
Query 1 ACCGGTTTTCATACCaaaaaaaTGGCGGCCAATGCCTCATTCGCCGCCGCATTACTCATC 60
||||||||||||| || ||||||||||| || |||||||||||||||||||||| |||||
Sbjct 94 ACCGGTTTTCATA-CACAAAAATGGCGGGCAGTGCCTCATTCGCCGCCGCATTATTCATC 152
Query 61 GGACTCTCGCTTCTCTTCGCCGTCGTGGCGGAAGATCCGTACAGATTCTTCGAATGGAAC 120
|||||||| ||||||||||||||| ||| |||||||||||||||||||| |||||||||
Sbjct 153 GGACTCTCTCTTCTCTTCGCCGTCACGGCTGAAGATCCGTACAGATTCTTTGAATGGAAC 212
Query 121 ATCACTTACGGCGATATCTACCCACTTGGAGTTCGCCAACAGGGTATTTTGATCAAC-GG 179
|| |||||||||||||| |||||||| || ||||||||||||||||||||||||||| ||
Sbjct 213 ATAACTTACGGCGATATATACCCACTCGGTGTTCGCCAACAGGGTATTTTGATCAACGGG 272
Query 180 GCAGTTTCCGGGACCGGACATTCACTCAGTTACTAATGATAATCTCATCATCAACGTCTA 239
|| ||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||
Sbjct 273 GC-GTTTCCGGGACCGGACATTCATTCGGTTACTAATGACAATCTCATCATCAACGTCTA 331
Query 240 CAATAGCCTCGACGAACCTTTCCTCCTTTCATGGAATGGAATTCAGCAGAGGAGGAACTC 299
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 332 CAATAGCCTCGACGAACCTTTCCTTCTTTCATGGAATGGAATTCAACAGAGGAGGAACTC 391
Query 300 TTTCGTTGATGGAGTGTATGGAACGACATGCCCAATCCCGCCGGGGAAGAACTACACTTA 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 392 TTTCGTTGATGGAGTGTATGGAACGACATGCCCAATCCCGCCGGGGAAGAACTACACTTA 451
Query 360 TATTCTTCAGATGAAGGATCAGATCGGAAGTTTCTACTACTTCCCGTCTCTCGG-TTTCC 418
|||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||
Sbjct 452 CATTCTTCAGATGAAGGATCAGATCGGAAGTTTTTACTACTTCCCTTCTCTCGGCTTTC- 510
Query 419 ACAAAGCCGCCGGTGGATTTGGTGGTATCCGTATCCTTAGTCGCCCGAGAATCCCTGTCC 478
||||||||||||||||||||||||| || |||||||| ||||| || |||||||| ||||
Sbjct 511 ACAAAGCCGCCGGTGGATTTGGTGGCATTCGTATCCTCAGTCGTCCTAGAATCCCGGTCC 570
Query 479 CTTTCCCTGATCCCGCCGGAGATACCACCGTCCTTATCGGCGACTGGTACAAATCAAACC 538
|||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||
Sbjct 571 CTTTCCCTGATCCCGCCGGAGATACCACTGTCCTTATCGGAGACTGGTACAAAGCAAACC 630
Query 539 ACACGGATTTGAGGGCACAGCTTGATAATGGTAAGAAGCTTCCTTTACCAGATGGTATCC 598
||||||||||||| |||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 631 ACACGGATTTGAGAGCACAGCTTGATAATGGTAAGAAGCTTCCTTTACCAGACGGCATCC 690
Query 599 TCATCAATGGTCGTTCAAGTGGTGCCACTCTCAATGTTGAACAAGGTAAGACATACAGGT 658
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 691 TCATCAATGGTCGTTCAAGTGGTGCAACTCTTAATGTTGAACAAGGTAAGACATACAGGT 750
Query 659 TGAGAATATCAAATGTTGGGTTACAAGACTCTCTCAACTTCCGCATTCAAGACCATAAGA 718
| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 751 TTAGAATATCCAATGTAGGGTTACAAGACTCTCTCAACTTCCGCATTCAAGACCATAAGA 810
Query 719 TGAAAGTGATCGAAGTCGAAGGGACACATACCCTTCAGACTACTTTCTCTTCGCTAGATG 778
|||||||| | ||||||||||| ||||| || |||||||||||||||||||| |||||||
Sbjct 811 TGAAAGTGGTGGAAGTCGAAGGAACACACACTCTTCAGACTACTTTCTCTTCACTAGATG 870
Query 779 TTCATGTTGGCCAATCTTACTCGGTCCTTGTAACTGCGGATCAAACTCCACGAGATTATT 838
|||||||||| ||||||||||| ||||||||||| ||||| || |||||||| |||||||
Sbjct 871 TTCATGTTGGACAATCTTACTCAGTCCTTGTAACCGCGGACCAGACTCCACGGGATTATT 930
Query 839 ACGTGGTCGTCTCTTCTCGGTTTACCTCTAATATCCTCACCACCACGGGTATTCTCCGTT 898
|||||||||||||||||||||||||||| ||| |||| || |||||||||||| |||| |
Sbjct 931 ACGTGGTCGTCTCTTCTCGGTTTACCTCAAATGTCCTTACTACCACGGGTATTTTCCGAT 990
Query 899 ACAGTAACTCTGCTGGTGCTGTTTCTGGACCTATTCCCGGTGGACCAACCATTCAAATTG 958
||||||| |||||||||| |||||||||||||||||| |||||||| ||||||||||| |
Sbjct 991 ACAGTAATTCTGCTGGTGGTGTTTCTGGACCTATTCCTGGTGGACCTACCATTCAAATCG 1050
Query 959 ACTGGTCCTTGAACCAGGCTCGAGCCATCAGGACTAACCTTACAGCGAGCGGACCAAGAC 1018
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 1051 ACTGGTCCTTGAACCAGGCTCGAGCCATCAGGACTAACCTTTCAGCGAGCGGACCAAGGC 1110
Query 1019 CGAATCCACAAGGATCATACCACTACGGTATGATAAACACTACAAGAACAATCAGACTTG 1078
| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1111 CAAATCCACAAGGATCGTACCACTACGGTATGATAAACACTACAAGAACGATCAGACTTG 1170
Query 1079 CTAGCTCTGCTGGTCAGGTCGACGGGAAGCAACGATACGCCGTGAACAGTGTATCATTCA 1138
||||||||||||||||||| || ||||||||||||||||| ||||||||||| |||||||
Sbjct 1171 CTAGCTCTGCTGGTCAGGTTGATGGGAAGCAACGATACGCTGTGAACAGTGTCTCATTCA 1230
Query 1139 AACCAGCAGACACTCCTCTAAAAATCGCGGACTACTTCAAGATTGACGGTGTTTACAGAA 1198
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1231 AACCCGCAGACACTCCTCTGAAAATCGCGGACTACTTCAAGATTGACGGTGTTTACAGAA 1290
Query 1199 GTGGAAGTATCCAATACCAACCCACTGGTGGAGGAATATACCTCGACACATCTGTTATGC 1258
||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1291 GTGGAAGCATACAGTACCAACCCACTGGTGGAGGAATATACCTCGACACATCTGTTATGC 1350
Query 1259 AAGTTGATTACAGAACCTTTGTGGAGATTGTTTTCGAGAACTCTGAAGATATTGTCCAGA 1318
||||||||||||||||||||||||||||| ||||||| || ||||| |||||||||||||
Sbjct 1351 AAGTTGATTACAGAACCTTTGTGGAGATTATTTTCGAAAATTCTGAGGATATTGTCCAGA 1410
Query 1319 GCTGGCATCTTGATGGTTACTCTTTCTGGGTTGTTGGAATGGACGGTGGGCAGTGGAGTC 1378
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 1411 GCTGGCATCTTGATGGTTACTCTTTCTGGGTTGTTGGAATGGATGGTGGACAGTGGAGTC 1470
Query 1379 CAGCCAGTAGGAACGAGTACAATCTACGCGATGCAGTCGCTCGCTGCACCGTGCAGGTAT 1438
||| |||||||||||||| || ||||||||||||||||||||||||||||| |||||||
Sbjct 1471 CAGATAGTAGGAACGAGTATAACCTACGCGATGCAGTCGCTCGCTGCACCGTTCAGGTAT 1530
Query 1439 ATCCGAGCTCATGGACAGCTATATTAATAGCACTTGACAACGTAGGAATGTGGAACCTAA 1498
| || ||||||||||| |||||||| |||||||| |||||||||||||||||||| ||||
Sbjct 1531 ACCCAAGCTCATGGACGGCTATATTGATAGCACTCGACAACGTAGGAATGTGGAATCTAA 1590
Query 1499 GATCCGAGTTCTGGGCGAGGCAATACTTAGGACAACAGTTGTATTTACGTGTCTACACAC 1558
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 1591 GATCCGAGTTCTGGGCGAGGCAATACTTAGGACAACAATTGTATTTACGTGTGTACACAC 1650
Query 1559 CCACGAGTTCTCTCAGAGATGAATATCCAATCCCCAAGAACGCTCTTCTCTGCGGTAGAG 1618
|| | | |||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1651 CCTCAACTTCTCTCAGAGATGAATATCCAATCCCCAAGAACGCTCTTCTCTGCGGGAGAG 1710
Query 1619 CCAGTGGTCGCCGCACCAGACCGCTTTGAGCTTGCGGTTAGATAGAGA 1666
||||||||||| |||||||||||||||||||| | ||||||||| |||
Sbjct 1711 CCAGTGGTCGCAGCACCAGACCGCTTTGAGCTGGTGGTTAGATATAGA 1758
> AT1G21860.1 | Symbols: sks7 | SKU5 similar 7 | chr1:7671028-7674215
REVERSE LENGTH=1617
Length=1617
Score = 1098 bits (594), Expect = 0.0
Identities = 1255/1567 (80%), Gaps = 73/1567 (5%)
Strand=Plus/Plus
Query 91 GAAGATCCGTACAGATTCTTCGAATGGAACATCACTTACGGC--GATATCTACCCACTTG 148
|||||||| |||||||||||||||||| || | || || ||| |||||| || ||||
Sbjct 73 GAAGATCCATACAGATTCTTCGAATGGCACGTAACCTATGGCAACATATCT--CCTCTTG 130
Query 149 GAGTTCGC-CAACAGGGTATTTTGATCAACGGGCAGTTTCCGGGACCGGACATTCA-CTC 206
| ||| || ||||||||||| ||||| |||||| ||||||| ||||| |||| ||| |||
Sbjct 131 GTGTT-GCGCAACAGGGTATATTGATTAACGGGAAGTTTCCAGGACCAGACA-TCATCTC 188
Query 207 -AGTTACTAATGATAATCTCATCATCAACGTCTACAA-TAGCCTCGACGAACCTTTCCTC 264
| |||| ||||| ||||||||||| ||||| | ||| | |||||||||||||||||
Sbjct 189 TA-TTACCAATGACAATCTCATCATTAACGTATTCAACCA-TCTCGACGAACCTTTCCT- 245
Query 265 CTT-TCATGGAATGGAATTCAGCAGA--GGAGGAACTCTTTCGTTGATGGAGTGTATGGA 321
|| || ||||| || |||| | | | ||| || || ||| |||||||| || |||
Sbjct 246 TTTGTCTTGGAACGGGATTC-G-AAATTGGAAAAATTCGTTCCAGGATGGAGTCTACGGA 303
Query 322 ACGACATGCCCAATCCCGCCGGGGAAGAACTACACTTATATTCTTCAGATGAAGGATCAG 381
|||| ||||||||||| |||||||||||||||||||| ||||||| | || ||||||
Sbjct 304 ACGATGTGCCCAATCCCACCGGGGAAGAACTACACTTACGCTCTTCAGGTTAAAGATCAG 363
Query 382 ATCGGAAGTTTCTACTACTTCCCGTCTCTCGG-TTTCCACAAAGCCGCCGGTGGATTTGG 440
||||||||||||||||||||||| ||||| || |||| ||||||| ||||| ||||| ||
Sbjct 364 ATCGGAAGTTTCTACTACTTCCCCTCTCTAGGATTTC-ACAAAGCTGCCGGCGGATTCGG 422
Query 441 TGGTATCCGTATC-CTTAGTCGCCCGA--GAATCCCTGTCCCTTTCCCTGA-TCCCGCCG 496
|||||||||||| | || || | | || |||| ||||| ||||| | ||| ||||
Sbjct 423 AGGTATCCGTATCTCC-AGCCGTGC-ATTGA-TCCCCGTCCCCTTCCCC-ACTCCGGCCG 478
Query 497 GA-GAT-ACCAC-CGTCCTTA-TCGGCGACTGGTACAAATCAAACCACACGGATTTGAGG 552
| ||| || || | |||| | | ||||||||||||||| | ||||||| ||| |||| |
Sbjct 479 -ATGATTAC-ACTC-TCCT-AGTAGGCGACTGGTACAAAACCAACCACAAGGACTTGAAG 534
Query 553 GCACAGCTTGATAATGGT--AAGAAGCTTCCTTTACCAGATGGTATCCTCATCAATGGTC 610
||||| || ||||||||| || || ||||||||||||||||| || ||||| |||||||
Sbjct 535 GCACAACTCGATAATGGTGGAA-AA-CTTCCTTTACCAGATGGAATTCTCATAAATGGTC 592
Query 611 GTTCAAGTGGTGCCACTCTCAATGTTGAACAAGGTAAGACATACAGGTTGAGAATATCAA 670
|| ||||| ||||||||||| |||||| ||||||||| || || |||| |||||||
Sbjct 593 GTAGTAGTGGCGCCACTCTCAACATTGAACCAGGTAAGACTTATAGACTGAGGATATCAA 652
Query 671 ATGTTGGGTTACAAGA-CTCTCTCAACTTCCGCATTCAAGACCATAAGATGAAAGT-GAT 728
||||||| ||||| || ||| ||||||||||| || ||| |||||| |||||| || | |
Sbjct 653 ATGTTGGATTACA-GAACTCCCTCAACTTCCGAATCCAAAACCATACGATGAA-GTTGGT 710
Query 729 CGAAGTCGAAGGGACACATACCCTTCAGACTACTTT-CTCTTCGCTAGATGTTCATGTTG 787
|| |||||||||| | | || |||||| | |||| ||||||||| |||||||| ||||
Sbjct 711 TGAGGTCGAAGGGAGATACACTATTCAGAAT-CTTTTCTCTTCGCTTGATGTTCACGTTG 769
Query 788 GCCAATCTTACTCGGTCCTTGTAACTGCGGATCAAACTCCACGAGATTATTACGTGGTCG 847
| |||||||||||||||||| |||| || ||||| || || |||||||||||| ||||
Sbjct 770 GTCAATCTTACTCGGTCCTTATAACAGCCGATCAGCCTGCAAAAGATTATTACGTTGTCG 829
Query 848 TCTCTTCTCGGTTTACCTCTAATATCCTCACCACCACGGGTA-TTCTCCGTTACAGTAAC 906
||||| | ||||||| || || || ||||| || || || | |||| | |||||||||
Sbjct 830 TCTCTAGTAGGTTTACATCAAAGATACTCACTACTACTGG-AGTTCTTCATTACAGTAAT 888
Query 907 TCTGCTGGTGCTGTTTCTGGACCTATTCCCGGTGGACCAACCATTCAAATTGA-CTGGTC 965
|||| || ||||||||||||||||||| | |||||||| || || || | ||||||
Sbjct 889 TCTGTTGCACCTGTTTCTGGACCTATTCCAGATGGACCAA---TT-AAGTTAAGCTGGTC 944
Query 966 CTTGAACCAGGCTCGAGCCATCAGGACTAACCTTACAGCGAGCGGACCAAGACCGAATCC 1025
|| ||||| |||||||| |||||||| ||||||||||| ||||||||||| || || ||
Sbjct 945 TTTTAACCAAGCTCGAGCTATCAGGACCAACCTTACAGCAAGCGGACCAAGGCCAAACCC 1004
Query 1026 ACAAGGATCATACCACTACGGTATGATAAACA-CTACAAGAACAATCAGACTTGCTAGCT 1084
|||||| ||||||| ||| ||| ||||||||| | || |||| ||||||||||||| |
Sbjct 1005 ACAAGGTTCATACCGCTATGGTGTGATAAACATC-ACCCGAACGATCAGACTTGCTAACA 1063
Query 1085 CTGCT-GGTCAGGTCGACGGGAAGCAACGATACGCCGTGAACAGTGTATCATTCAAACCA 1143
| || || || | || || ||||||||||||||||||||||||| |||||| | |||
Sbjct 1064 AT-CTTGGACATATTGAAGGCAAGCAACGATACGCCGTGAACAGTGCATCATTTTACCCA 1122
Query 1144 GCAGACACTCCTCTAAAAATCGCGGACTACTTCAAGATTGACGGTGTTTACA-GAAGTGG 1202
|||||||| ||| | ||| | | ||| |||||||| ||||||||||| |||| | |||
Sbjct 1123 GCAGACACCCCTTTGAAACTAGTGGATTACTTCAAAATTGACGGTGTATACAAGCC-TGG 1181
Query 1203 AAGTATC-CAATACCAACCCACTGGTGGAGGAATATACCTCGAC-ACATCTGTTATGCAA 1260
|||||| | |||| ||||| ||||| ||||| || | || |||||||| ||||||
Sbjct 1182 AAGTATATCTG-ACCAGCCCACAAATGGAGCAATATTCC-CTACCACATCTGTAATGCAA 1239
Query 1261 GTTGATTACAGAACCTTTGTGGA-GATTGTTTTCGAGAACTCTGAAGATATTGTCCAGAG 1319
| ||||| |||| |||||||||| | || |||||||||| || |||||||||||||||||
Sbjct 1240 GCTGATTTCAGAGCCTTTGTGGAAG-TTATTTTCGAGAATTCGGAAGATATTGTCCAGAG 1298
Query 1320 CTGGCATCTTGATGGTTACTCTTTCTGGGTTGTTGGAATGGA-CGGTGGGCAGTGGAGTC 1378
|||||| || || ||||||||||||| |||||||||||||| | |||| |||||||||
Sbjct 1299 CTGGCACCTCGACGGTTACTCTTTCTACGTTGTTGGAATGGAACT-TGGGAAGTGGAGTC 1357
Query 1379 CAGCCAGTAGGAACGAGTACAATCTACGCGATGCAGTCGCT-CGCTGCACCGTGCAGGTA 1437
| |||||||| || | ||||||||| ||| ||| || | || ||||| | |||||
Sbjct 1358 CTGCCAGTAGAAAAGTCTACAATCTAAACGACGCAATCT-TACGGTGCACTATTCAGGTG 1416
Query 1438 TATCCGAGCTCATGGACAGCTATATTA-ATAGCACTTGACAACGTAGGAATGTGGAACCT 1496
|||||||| |||||||| || |||| | |||||||| ||||| |||||||||||||| |
Sbjct 1417 TATCCGAGATCATGGACTGCCATAT-ACATAGCACTGGACAATGTAGGAATGTGGAATAT 1475
Query 1497 AAGATCCGAGTTCTGGGCGAGGCAATACTTAGGACAACAGTTGTATTTACGTGTCTACAC 1556
||||| ||| | |||| || |||||||| ||||||||||| || | ||||| |||||
Sbjct 1476 GAGATCAGAGATATGGGAAAGACAATACTTGGGACAACAGTTCTACATGCGTGTTTACAC 1535
Query 1557 ACCCACGAGTTCTCTCAGAGATGAATA-TCCAATCCCCAAGAACGCTCTTCTCTGCGGTA 1615
| || | | |||||||||||||||||| | | |||| |||||||||||||| || || |
Sbjct 1536 AACCTCTACTTCTCTCAGAGATGAATACTTGA-TCCCTAAGAACGCTCTTCTGTGTGGCA 1594
Query 1616 GAGCCAG 1622
| |||||
Sbjct 1595 GGGCCAG 1601
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82379094345
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5